Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0856 ATGGAATTCTACAATAACCTAGAAGACTACTCGAAGAGTTCGTCGAGCGAAGAAACCGATCGGTCGTCGTACGAGCAAGCCGGAGATCATCAAGAGATGGGAACAGGAAGATCCTATGAGTGTGTGTTTTGCAAGAGGGGATTCACCACAGCACAAGCTTTGGGTGGACACATGAACATTCATAGAAAAGATAGAGCCAATAACAAAGCCAAAATTCCAGCTTCTAGTTCAAGCAAGGTTGATGATGAGAACTACTATGCAGATCTAGGGCACTATTCATCACCAATTCCAAGCTATCTTGCAAGAAATGGAAATTATCATCATGAGGAAGCAAGATTTGGATAG 345 0.4261 MEFYNNLEDYSKSSSSEETDRSSYEQAGDHQEMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNKAKIPASSSSKVDDENYYADLGHYSSPIPSYLARNGNYHHEEARFG* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0856 114 Pfam C2H2-type zinc finger 39 63 - -
Ahy12g0856 114 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 5 103 - -
Ahy12g0856 114 MobiDBLite consensus disorder prediction 1 35 - -
Ahy12g0856 114 Gene3D Classic Zinc Finger 11 91 - -
Ahy12g0856 114 SUPERFAMILY beta-beta-alpha zinc fingers 37 65 IPR036236 -
Ahy12g0856 114 MobiDBLite consensus disorder prediction 13 27 - -
Ahy12g0856 114 MobiDBLite consensus disorder prediction 59 80 - -
Ahy12g0856 114 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Ahy12g0856 114 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Ahy12g0856 114 PANTHER OS07G0101800 PROTEIN 5 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0856 Ahy-Chr12 16584062 16585454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0856 39 114 C2H2 Transcription Factor Family AT5G43540 43.750 3.60e-15 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy12g0856 zf-C2H2_6 7.50E-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0856 - - aip:107628237 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0856 12 16584062 16585454 Ahy2g0727 2 12680616 12681909 hybridization