Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0854 ATGGAAGGGAAGAACTATTATATGAAGAACAAGAACACTAGTAGTACTACTCATAATAACAATAGCTTTGAGGAGCATTATTCATGGGAAACTTCTTCATCAACACGGCCAACAAGAAGCTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAATCTGCTCAAGCTTTGGGTGGACACATGAATGTTCATAGAAGGGATAGGGCAAGATTGAGATCTTCATGGATTTCTAATCACACCCCTAAACCTAACCCTAACCCTAATCCTAACCCTACAACAACTCTTGTTTCTTCATCATCATCTCCTTTATCTAATGATCCTATCAATAATTGTTCACATATTTCTCCAATTTATAGCCCTAATTTTTGTCTCAATTTGTCGTCGTCTTCTTCTTCACCCTCCCCGAATTTAGCTTCCATCACAAGAAGTGAAGATAAAAAACCTAGACTCATCATATCTACTCCACAAGTTCTTCCTCTTGTGATGAATAGTCCTCAAAACATGGTGATGATGATGAGTAAGAAAAGCAAAAGTGGTGATTTTGTTGGTGGGGTTGATGATGATGAGAATTACAAGGATAATGTTTTCAAGCACAAGAATGAGCATAACAACATTACCTTGGAGTTGGGAATAGGATTGGTTAAGCACAAAGAGCAGAAGTTGGATTTGGAGCTTAGACTCTAG 681 0.3789 MEGKNYYMKNKNTSSTTHNNNSFEEHYSWETSSSTRPTRSYACSFCKREFKSAQALGGHMNVHRRDRARLRSSWISNHTPKPNPNPNPNPTTTLVSSSSSPLSNDPINNCSHISPIYSPNFCLNLSSSSSSPSPNLASITRSEDKKPRLIISTPQVLPLVMNSPQNMVMMMSKKSKSGDFVGGVDDDENYKDNVFKHKNEHNNITLELGIGLVKHKEQKLDLELRL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0854 226 Pfam C2H2-type zinc finger 41 65 - -
Ahy12g0854 226 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Ahy12g0854 226 Gene3D Classic Zinc Finger 10 83 - -
Ahy12g0854 226 MobiDBLite consensus disorder prediction 7 22 - -
Ahy12g0854 226 MobiDBLite consensus disorder prediction 74 103 - -
Ahy12g0854 226 SMART c2h2final6 41 63 IPR013087 -
Ahy12g0854 226 MobiDBLite consensus disorder prediction 1 22 - -
Ahy12g0854 226 PANTHER OS07G0101800 PROTEIN 9 226 - -
Ahy12g0854 226 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 9 226 - -
Ahy12g0854 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Ahy12g0854 226 SUPERFAMILY beta-beta-alpha zinc fingers 38 67 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0854 Ahy-Chr12 16501026 16502242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0854 1 226 C2H2 Transcription Factor Family AT3G23130 32.618 2.12e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy12g0854 zf-C2H2_6 6.50E-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0854 - - ahf:112721869 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0854 12 16501026 16502242 Ahy2g0726 2 12577953 12578639 hybridization
Ahy16g0136 16 1388758 1389375 Ahy12g0854 12 16501026 16502242 PCT
Ahy6g1195 6 17582813 17583875 Ahy12g0854 12 16501026 16502242 PCT
Ahy12g0854 12 16501026 16502242 Ahy16g0136 16 1388758 1389375 PCT
Ahy12g0854 12 16501026 16502242 Ahy6g1195 6 17582813 17583875 PCT