LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy12g0775	ATGGAGAAGTATGAGATTCTTCAACAGATTGGCAAAGGTTCCTTTGGTTCTGCTCTTCTTGTTAGGCACAGACATGAAAACAGAAAGTATGTACTCAAGAAGATCAAACTTGCTCGCCAAACTGACAGAACTCGTAGATCTGCTCATCAAGAGATGGAACTCGTCTCTAAAGTTCGAAATCCATTTATCGTGGAATATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATCGGCTATTGTGAAGGCGGAGATATGGCTGAAGCTATAAGAAAGTCTAATGGTATTCATTTTTCCGAAGAGAAGCTTTGTAAGTGGCTTGTTCAACTGCTGATGGCACTTGATTACTTGCATACGAATCATATTCTGCACCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGTGATGATCTTGCTTCCTCGGTTGTCGGGACTCCAAGTTATATGTGTCCGGAGCTTCTTGCTGATATACCTTATGGCTCTAAGTCAGATATCTGGTCTTTAGGATGCTGTGTTTATGAAATGGCTGCACATAAGCCAGCTTTCAAAGCTCTTGATATGCAAACATTGATTAATAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACCATGTATTCCAGTCCATTTCGAGGGCTTGTCAAGAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAAGTGCTGCAGAGTTACTAAATCATCCACATCTTCAGCCTTATATTCACAAAATTCACCTGAAACTCAATACCCCAAGAAGAAGTACTTTTCCCTTCCAGTGGCATGATTCGAGTTACTTAAGGAGAAACCGCTTTTTCGAGCCAGAATCTGTTTCTACTATTTCAGACAGACACAAAAGATTATCCTTTAGCAATGACAGAGCTTTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTCTCTGTTCTGCTCAAAGAGCACAAGGATCCTTCACTTATTCAAAAGAGAGATTGTATGATCTTTCTGTTGGTTGTGTCCGGGAAGAGTTGAATGCTAACAAGTCGAAAGCAGCAAAGTTCTCAGCTTTCGACAGGACACCAAGATCGCAAGCAGGGAAGATTTCCACCCCGAGACGGCCGATAATACCGTCGATATCACATACTAGCTCCAAGCGTGATTCACTTCCAGCATCTCCGGCCGCAAAGTTCGCCCCACCAACTCGTCGAGCATCTCTTCCACTTCTTACACCTTCAACTGGAGTCATGGCAACAGCTACCCCTTACAGAGCCAGCATTGGCCTTCTAAGAAGCCTGGACTCACCAGATATTTCTGTCAATGCACCACGAATCGACAAGATGGCAGAGTTCCCTCTAGCATCCTGCGAGGGCAATCATTTCTTCCCCGTTCGTGGCACCTCATCAACGTCGGCTCATTGCTCGTCTAGCTCCCCCGGTAGCGCCGAATGCTCATTCACAAAAGACAAGTGTACAGTCCAAGTTGTGGACAAGGCCAGTGTCCCTACTATTACCACTGGTGTTAATAGCACTCCAGCTCCGGTCTCTCACGGCAGTGAATGCTCTGAGCCCGGGGCAACTATTGTTTCAAGCCATTCCTCGGCTGACTCTCGTCAGCGCAGGTTCGACACCTCGTCGTACCAGCAGCGCGCGGAGGCGTTGGAAGGGTTGCTGGAGTTCAGTGCAAGGCTCCTACAGCAACAGAGGTTTGAAGAGCTTGGTGTGTTGTTGAAACCATTTGGACCTGAGAAGGTTTCACCAAGGGAAACAGCTATTTGGTTGACTAAGAGCTTCAAAGAAACTGCGGCATAA	1848	0.4502	MEKYEILQQIGKGSFGSALLVRHRHENRKYVLKKIKLARQTDRTRRSAHQEMELVSKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIRKSNGIHFSEEKLCKWLVQLLMALDYLHTNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQTLINKINKSLVAPLPTMYSSPFRGLVKSMLRKNPELRPSAAELLNHPHLQPYIHKIHLKLNTPRRSTFPFQWHDSSYLRRNRFFEPESVSTISDRHKRLSFSNDRALNPSISGTEVGSLCSAQRAQGSFTYSKERLYDLSVGCVREELNANKSKAAKFSAFDRTPRSQAGKISTPRRPIIPSISHTSSKRDSLPASPAAKFAPPTRRASLPLLTPSTGVMATATPYRASIGLLRSLDSPDISVNAPRIDKMAEFPLASCEGNHFFPVRGTSSTSAHCSSSSPGSAECSFTKDKCTVQVVDKASVPTITTGVNSTPAPVSHGSECSEPGATIVSSHSSADSRQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETAA*	616

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy12g0775	615	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
Ahy12g0775	615	SMART	serkin_6	4	258	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ahy12g0775	615	CDD	STKc_Nek	3	258	-	-
Ahy12g0775	615	MobiDBLite	consensus disorder prediction	521	553	-	-
Ahy12g0775	615	PANTHER	SERINE/THREONINE-KINASE NEK4	1	604	-	-
Ahy12g0775	615	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	125	137	IPR008271	GO:0004672\|GO:0006468
Ahy12g0775	615	MobiDBLite	consensus disorder prediction	370	411	-	-
Ahy12g0775	615	Gene3D	Transferase(Phosphotransferase) domain 1	84	276	-	-
Ahy12g0775	615	MobiDBLite	consensus disorder prediction	388	402	-	-
Ahy12g0775	615	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	1	604	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy12g0775	Ahy-Chr12	13688806	13694840	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy12g0775	10	259	MAP Kinase Kinase Kinase	AT1G53570	30.196	7.18e-36	139

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Ahy12g0775		Pkinase	1.20E-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy12g0775	K08857		-	gmx:100810347	959.518

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Ahy12g0775	12	13688806	13694840	Ahy12g0775	12	13688806	13694840	ECH
Ahy12g0775	12	13688806	13694840	Ahy9g1392	9	61485882	61493352	hybridization
Ahy16g0187	16	1970324	1974339	Ahy12g0775	12	13688806	13694840	PCT
Ahy6g1137	6	16628005	16632236	Ahy12g0775	12	13688806	13694840	PCT
Ahy12g0775	12	13688806	13694840	Ahy16g0187	16	1970324	1974339	PCT
Ahy12g0775	12	13688806	13694840	Ahy6g1137	6	16628005	16632236	PCT

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