Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0703 ATGAAGGGTCTTATTGATGGGAATACTGTGTGCCTGATGTTATTTGGATTGTGTTTTTTTTTCCCTAGTATTATGGCTATTATAACAACAACAAGGAGGACTGAAAGGTTCAGTGGTACAACACCACCAACATGTAAGTACTGGCTAGCTGGGAGATGCAACAGGAATCCTTGCAAATTTTTGCATAGCTTATCGACATTGCCATCCAATGTACATAATGCCAATATGACATATATGCATTCGAAGAATCCACATTTGTCTGCTGAGAAGATGACCAGTTCCTCTGTTAAGAAGCCAACAAATTGCGCACCCAAGGCCTTCAAGAAGCCAGCAAATTGTGCACGAAAGGCTGTTGAGTGTGGATCAGAAGCTATGTCTGTTGAGAAGCCAACCCAGTGTGAACAAATGGATATATCCATTGAAAAGACTGAAAGTGTGGAAGAAGTGGCCACTGTTGCTAAGTCTCCTATGGAGAAATCACGCAGTATTTGTAAATATTGGATGACTGACAATTGTGTGCATGGTGACCTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTACTACACTTGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGAATTGCATTACCTGCTGGTTCAGATAAACTTTATTCTGGTAGCACTGATGGCACAGTTCGGGCATGGGATTGCAACACTGGCCATTGTGTTAACATGATCCATCTTAATTCTGAAGTTACCTCGCTCATATCTGAGGGCCCATGGATTTTTGCCGGCGTGAAGAATGCTGTAAAGGCATGGAATATTCAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTTCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATACAGCTCTGATCCCAAACCTGAGTCTCCTTTCGAACTGGTTGCAACACTAAGTGGTCATACTAAACCGGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCTTTATTCTGGGTCAATGGACCATAGCATCAAGGTGTGGGACCTAAATACATTACAGTGCACAATGACACTTAACGGGCATACCGACGTAGTCACGTCACTTCTTTGTTGGGAAGATTACTTATTATCGAGTTCATATGATTGCACAGTCAATGTTTGGGTGTGCACTGAGGAGGGAACTCTGAAAGTGGCATATACTCACACTGACAAAAATGCTATTCTTGGACTATATGGAATGACAGATGCAGACGCCAAGCCAATATTGTTCTGCTCGTGCCAAGACAATTCAGTTCGCATGTATGAGTTGCCGACGTTTTTAGAGAGAGGTCGACTATTTACAAGACGAGAAGTTCGATCCTTCGCGATAGGTCCTGGTGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTGAATGTGTGGAGATGGTTGGAAGAGCCAAAGGTGCCAACCTCTTGA 1473 0.4331 MKGLIDGNTVCLMLFGLCFFFPSIMAIITTTRRTERFSGTTPPTCKYWLAGRCNRNPCKFLHSLSTLPSNVHNANMTYMHSKNPHLSAEKMTSSSVKKPTNCAPKAFKKPANCARKAVECGSEAMSVEKPTQCEQMDISIEKTESVEEVATVAKSPMEKSRSICKYWMTDNCVHGDLCQNLHSWFYGDGFTTLAKLHEHKKVVTGIALPAGSDKLYSGSTDGTVRAWDCNTGHCVNMIHLNSEVTSLISEGPWIFAGVKNAVKAWNIQTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRYSSDPKPESPFELVATLSGHTKPVVCLAIGCYKMLYSGSMDHSIKVWDLNTLQCTMTLNGHTDVVTSLLCWEDYLLSSSYDCTVNVWVCTEEGTLKVAYTHTDKNAILGLYGMTDADAKPILFCSCQDNSVRMYELPTFLERGRLFTRREVRSFAIGPGGLFFTGDGTGLLNVWRWLEEPKVPTS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0703 490 ProSiteProfiles Zinc finger C3H1-type profile. 158 185 IPR000571 GO:0046872
Ahy12g0703 490 SMART c3hfinal6 159 184 IPR000571 GO:0046872
Ahy12g0703 490 SMART c3hfinal6 40 64 IPR000571 GO:0046872
Ahy12g0703 490 SMART WD40_4 315 353 IPR001680 GO:0005515
Ahy12g0703 490 SMART WD40_4 356 393 IPR001680 GO:0005515
Ahy12g0703 490 SMART WD40_4 268 305 IPR001680 GO:0005515
Ahy12g0703 490 SMART WD40_4 443 480 IPR001680 GO:0005515
Ahy12g0703 490 SMART WD40_4 399 440 IPR001680 GO:0005515
Ahy12g0703 490 SMART WD40_4 189 228 IPR001680 GO:0005515
Ahy12g0703 490 SUPERFAMILY WD40 repeat-like 190 483 IPR036322 GO:0005515
Ahy12g0703 490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Ahy12g0703 490 PRINTS G protein beta WD-40 repeat signature 215 229 IPR020472 -
Ahy12g0703 490 PRINTS G protein beta WD-40 repeat signature 380 394 IPR020472 -
Ahy12g0703 490 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Ahy12g0703 490 PANTHER - 38 488 IPR044715 -
Ahy12g0703 490 ProSitePatterns Trp-Asp (WD) repeats signature. 340 354 IPR019775 -
Ahy12g0703 490 ProSiteProfiles Zinc finger C3H1-type profile. 39 65 IPR000571 GO:0046872
Ahy12g0703 490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 356 - -
Ahy12g0703 490 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 362 IPR001680 GO:0005515
Ahy12g0703 490 SUPERFAMILY CCCH zinc finger 158 183 IPR036855 GO:0046872
Ahy12g0703 490 Pfam WD domain, G-beta repeat 358 392 IPR001680 GO:0005515
Ahy12g0703 490 Pfam WD domain, G-beta repeat 317 353 IPR001680 GO:0005515
Ahy12g0703 490 Pfam WD domain, G-beta repeat 193 228 IPR001680 GO:0005515
Ahy12g0703 490 Gene3D - 318 489 IPR015943 GO:0005515
Ahy12g0703 490 Gene3D - 173 317 IPR015943 GO:0005515
Ahy12g0703 490 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 392 IPR001680 GO:0005515
Ahy12g0703 490 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 38 488 - -
Ahy12g0703 490 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0703 Ahy-Chr12 11529994 11533152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0703 254 444 Miscellaneous Gene Families AT5G08390 25.381 2.27e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy12g0703 WD40 1.60E-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0703 - - ahf:112726849 1017.3