Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0673 ATGAAGGGTGTTATTGATGGGAATACTGTTTTATTTTGTAGTATCATGGCTGTTATAACAACAACAAGGAGGACTGAACGGTTCCGTCCTACAACACGACCAACATGTAAGTATTGGCAAGCTGGGAGATGCAACAGAAATCCTTGTCAATTTTCACATAGCTTACCAACCTCGCCATCCAATGTATACTATAATGCCAATACGACATATAAGCATTCGAAAAAGCCCGATTCGTCCGTTGAGAAGATGGCCAGTTCCTCTGCTAAGAAGGCAATAAATTGCGCACCCAAGGACTTCAAGAAGCCAGAAAATTGTGCACTAAAGGCTGTTGAGTGCAGACCAGAAGCAGAAGCTATATCTGTTGAGAAGCCAAGCAAGTGTGAAGGCAAGTGTGAAGAAAAGGCTGTATTGATTGAAAAGACTGCAGACGTGGAAGATGTGGCCACTGCTGCTAAGGCTTCTGTGGATAAATCACGCAGTATTTGCAAATCTTGGATGACTGATAATTGTGTGGATGGTGACTTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACACTTGCAAAGCTTCATGAACACAACAAGGCAATCACTGGCATTGCACTGCCGGCTGGTTCAAACAAACTTATTTCTGGTAGCACTGACGGCACAGTTCGGGCATGGGACTGCAACACTGGCCGTTGTGTTAACATGATCCATCTTAATTCTCCAGTTACCTCACTTATATCTGAGGGCCCATGGATCTTTGCCGGTGTGAAAAATGCTGTGAAGGCATGGAATATTCAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCTTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTTTGAGACTCCTTTCAAACTGGTTGCAACACTAAGTGGTCATAGTAAACCAGTGGTTTGTCTTGCTATTGGATGTCACAAGATGCTTTATTCTGGATCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTCCAGTGCACAATGACACTTAACGGGCATACCGACGTTGTCACATCACTTATTTGCTGGGACAATTACTTGTTATCGGGTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACTGAGGAGGGAACTCTAGAAGTGGCATACACTCACACTCACCAAATTGCTGTTCTTGGACTGTATGGGATGACTGATGTAGAGGCGAAGCCAATATTGTTCTGCTCGTGCAAAGATAATTCAGTTCGTATGTATGAGTTGCCGACGTTTCTAGAGAGAGGTCGACTATTTACAAGACAAGAAGTTCGATCCTTTCAGATAGGCCCTGGCGGACTCTTCTTTACTGGAGATGAGACTGGTTTGCTGAATGTGTGGAAATGGTTAGAAGAGTAG 1437 0.4384 MKGVIDGNTVLFCSIMAVITTTRRTERFRPTTRPTCKYWQAGRCNRNPCQFSHSLPTSPSNVYYNANTTYKHSKKPDSSVEKMASSSAKKAINCAPKDFKKPENCALKAVECRPEAEAISVEKPSKCEGKCEEKAVLIEKTADVEDVATAAKASVDKSRSICKSWMTDNCVDGDLCQNLHSWFYGDGFSTLAKLHEHNKAITGIALPAGSNKLISGSTDGTVRAWDCNTGRCVNMIHLNSPVTSLISEGPWIFAGVKNAVKAWNIQTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRCSFETPFKLVATLSGHSKPVVCLAIGCHKMLYSGSMDHSIKVWDLDTFQCTMTLNGHTDVVTSLICWDNYLLSGSSDCTVNVWVCTEEGTLEVAYTHTHQIAVLGLYGMTDVEAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFQIGPGGLFFTGDETGLLNVWKWLEE* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0673 478 ProSiteProfiles Zinc finger C3H1-type profile. 30 56 IPR000571 GO:0046872
Ahy12g0673 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 356 IPR001680 GO:0005515
Ahy12g0673 478 ProSiteProfiles Zinc finger C3H1-type profile. 156 183 IPR000571 GO:0046872
Ahy12g0673 478 PANTHER - 29 478 IPR044715 -
Ahy12g0673 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 386 IPR001680 GO:0005515
Ahy12g0673 478 SMART WD40_4 187 226 IPR001680 GO:0005515
Ahy12g0673 478 SMART WD40_4 393 434 IPR001680 GO:0005515
Ahy12g0673 478 SMART WD40_4 266 303 IPR001680 GO:0005515
Ahy12g0673 478 SMART WD40_4 350 387 IPR001680 GO:0005515
Ahy12g0673 478 SMART WD40_4 437 474 IPR001680 GO:0005515
Ahy12g0673 478 SMART WD40_4 309 347 IPR001680 GO:0005515
Ahy12g0673 478 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 29 478 - -
Ahy12g0673 478 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Ahy12g0673 478 PRINTS G protein beta WD-40 repeat signature 213 227 IPR020472 -
Ahy12g0673 478 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Ahy12g0673 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 235 IPR001680 GO:0005515
Ahy12g0673 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 226 - -
Ahy12g0673 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 350 - -
Ahy12g0673 478 SMART c3hfinal6 157 182 IPR000571 GO:0046872
Ahy12g0673 478 SMART c3hfinal6 31 55 IPR000571 GO:0046872
Ahy12g0673 478 Pfam WD domain, G-beta repeat 352 386 IPR001680 GO:0005515
Ahy12g0673 478 Pfam WD domain, G-beta repeat 311 347 IPR001680 GO:0005515
Ahy12g0673 478 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Ahy12g0673 478 SUPERFAMILY WD40 repeat-like 179 474 IPR036322 GO:0005515
Ahy12g0673 478 Gene3D - 311 478 IPR015943 GO:0005515
Ahy12g0673 478 Gene3D - 153 310 IPR015943 GO:0005515
Ahy12g0673 478 ProSitePatterns Trp-Asp (WD) repeats signature. 334 348 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0673 Ahy-Chr12 10783164 10787530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0673 252 438 Miscellaneous Gene Families AT5G08390 26.667 2.46e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy12g0673 WD40 1.50E-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0673 - - ahf:112726849 785.793