Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0639 ATGGAAGCAGCTACAGCAAGTACTACTTCCTCTCAGTCTCGCCAGAGAAAGCTGAAGAGAAAGCGCGCCGCCGCGTTGGCGAGTGACCCCCAACTCGACCGACTTAACTCGCTGCCTTGGAACCCTTCGTTTCCACGAAACAATGACGAAGATGATAACAATAACGAAAACGATCCCTTTGCTATGCTCGCTACTGGCTCCAACGAGCTCGAAGGAGGTTTCCTCTCGCTCGAGGAGATCGACGAGGCTGATTACGGTTTTTCCATTCCTGAACCTCAAATTAACGAGAAGAAGAACCAGAAGAAGAAGCATAAACTCGACGAGAATGTGATAGAAGAGAAGAAGAAGAAGGAAGAAGAGGAAGGAGATGATGGAGTTGGCGGTGGCGGCGGCGGTGGTAGCGGTGAGGTTGAAGTGAAGAAGGAAAAGAAAAATGACAAGAAGAAGAAGAAGAAGAAAAAGAAGACAAAGAAGGATAAGAAGAAGGAGGAGGAAAAGGAGGAGGAAGCGGTTACCGAAAACCAGAATGTTGAGAAGCCAGATACTGGTCTAGATACTGATGTGAAGGATGATGATGATGATGTTGGGGAAGAAGACTTTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCTTTGCTGATGAAAGCAATTTACAAGCTTGGTTTCAAGGAACCGACACCAATTCAGAAAGCTTGTATTCCTGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCTGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGTATTTTGGAGGAACGGGAGAAGGCTACAAAGATGGAGGAAGAAAGGGGTGAAGAGCCAGAAAAATATGCTCCTACAGGAATTTTGAGGGCTCTAATTGTTGCCCCAACCAGAGAGCTTGCTATTCAGGTAACTGATCATCTGAAAGCAGTAGCTAAGTATATTAATGTTAGGGTGACCCCTATTGTTGGGGGAATTTTAGCCGAAAAGCAGGAGAGACTTTTAAAATCAAGACCTGAGATTGTTGTTGGAACTCCAGGGAGGTTGTGGGAACTTATGTCAAGTGGAGAAAAGCATCTAGTTGAGTTACATTCATTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAACGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCCATGCCAAATATCTCCGCCGAAGATAATTCTCAACATGCACAAAATTGTGTTACAGTTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTTGTGTTTTCAGCTACTGTTGCACTTTCTGCTGATTTTCGCAAGAAGCTTAAGCGCGGTTTAGTAAAACAAAAACAATCATTCACAGAGGAACTGAATTCTATTGAAACTCTTTCTGAACGAGCTGGAATGAGATCCAATGCTGCAATTATTGATCTTACCAACCCATCGATATTGGCAGCCAAGCTTGAGGAATCATTTATTGAATGCAGGGAAGAAGATAAAGATGCCTACTTGTATTATATTTTGACTGTCCATGGACAAGGTCGCACCATAGTTTTCTGTACATCAATTGCAGCTTTGCGCCATATTTCTTCCATACTGCGGATTCTTGGCATTGATGTTTGGACTCTGCATGCACAAATGCAGCAGCGAGCACGTTTAAAGGCCATGGATCGTTTTCGTGAAAGTGAAAATGGCATACTAGTTGCTACGGATGTTGCTGCAAGGGGTCTTGATATTCCCGGTGTTAGAACTGTTGTCCACTATCAACTTCCGCATTCAGCAGAGGTTTATGTGCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAGTCTCACCAAAAGAAACGGCAAAGTTTGCTTCGCTGCTCAAATCATTTTCTAAGGACAATTTTCAGCGGTTTCCTTTACAGAACTCATACATGCCAGAGGTTTTAAAACGATTGTCTCTTGCACGCCAAATTGACAAAATAACACGAAAGGATTCTCAGGTGAAAGCTGAGAAAAACTGGTTTGATCGAAATGCTAACTCAGTTGAATTAGTTACTGAAAATGACGACAGTGAGGAGGAACAAGTGAACAAACACAAGCAAATGAAAGCCAGTTCTAAACAGTTGAAGACATTGCAACAGGAGCTCAAAATGTTGATTTCACGTCCTTTACAATCAAAGACATTTTCACATCGATATTTAGCAGGGGCTGGTGTCACACCTGTCATGCAGGAACAATTGCTACAATTAGCAAAGCAAAAACTAAATGATCGCCCGGGCTCAGGAGTAGGCAAGAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTTGAAGCACTTCAGGCACTCCGGAATGCTGGTGAAGAGGTGCGCATGGATGTCAAGGATTTTGCTGGAAAACGGAGAAATATAGAAAATCGGAAAAGAAAAAGAAAAGAGGAGAAGAAACGTTTGCGTGATCAGCGAAGAAAGCAGAAGAAAAAGCTAAAACAGGACAAGGACTAG 2526 0.4279 MEAATASTTSSQSRQRKLKRKRAAALASDPQLDRLNSLPWNPSFPRNNDEDDNNNENDPFAMLATGSNELEGGFLSLEEIDEADYGFSIPEPQINEKKNQKKKHKLDENVIEEKKKKEEEEGDDGVGGGGGGGSGEVEVKKEKKNDKKKKKKKKKTKKDKKKEEEKEEEAVTENQNVEKPDTGLDTDVKDDDDDVGEEDFDETEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKATKMEEERGEEPEKYAPTGILRALIVAPTRELAIQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKSRPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMPNISAEDNSQHAQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGLVKQKQSFTEELNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGIDVWTLHAQMQQRARLKAMDRFRESENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALVSPKETAKFASLLKSFSKDNFQRFPLQNSYMPEVLKRLSLARQIDKITRKDSQVKAEKNWFDRNANSVELVTENDDSEEEQVNKHKQMKASSKQLKTLQQELKMLISRPLQSKTFSHRYLAGAGVTPVMQEQLLQLAKQKLNDRPGSGVGKKGKLVVIGQDCVEALQALRNAGEEVRMDVKDFAGKRRNIENRKRKRKEEKKRLRDQRRKQKKKLKQDKD* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0639 841 MobiDBLite consensus disorder prediction 1 67 - -
Ahy12g0639 841 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 377 385 IPR000629 -
Ahy12g0639 841 MobiDBLite consensus disorder prediction 811 841 - -
Ahy12g0639 841 Pfam DEAD/DEAH box helicase 230 438 IPR011545 GO:0003676|GO:0005524
Ahy12g0639 841 MobiDBLite consensus disorder prediction 85 198 - -
Ahy12g0639 841 CDD DEADc_DDX24 217 482 - -
Ahy12g0639 841 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 92 762 - -
Ahy12g0639 841 Gene3D - 138 456 IPR027417 -
Ahy12g0639 841 Coils Coil 808 841 - -
Ahy12g0639 841 MobiDBLite consensus disorder prediction 95 124 - -
Ahy12g0639 841 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 206 234 IPR014014 GO:0003724
Ahy12g0639 841 MobiDBLite consensus disorder prediction 34 48 - -
Ahy12g0639 841 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 455 IPR014001 -
Ahy12g0639 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 628 IPR027417 -
Ahy12g0639 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 401 IPR027417 -
Ahy12g0639 841 Coils Coil 140 174 - -
Ahy12g0639 841 Pfam Helicase conserved C-terminal domain 504 612 IPR001650 -
Ahy12g0639 841 Coils Coil 101 123 - -
Ahy12g0639 841 Coils Coil 709 729 - -
Ahy12g0639 841 MobiDBLite consensus disorder prediction 808 841 - -
Ahy12g0639 841 MobiDBLite consensus disorder prediction 160 186 - -
Ahy12g0639 841 PANTHER RNA HELICASE 92 762 - -
Ahy12g0639 841 SMART ultradead3 225 465 IPR014001 -
Ahy12g0639 841 CDD SF2_C_DEAD 493 622 - -
Ahy12g0639 841 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 653 IPR001650 -
Ahy12g0639 841 MobiDBLite consensus disorder prediction 144 159 - -
Ahy12g0639 841 Gene3D - 490 729 IPR027417 -
Ahy12g0639 841 SMART helicmild6 532 613 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0639 Ahy-Chr12 10340938 10347733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0639 207 653 Eukaryotic Initiation Factors Gene Family AT5G11200 27.389 1.06e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0639 K14805 - gmx:100806018 1147.11