Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0631 ATGGCTATTATAACAACAACAAAGAGGACTGAACGGTTCCGTCGTACAACACCACCAACATGCAAGTATTGGCTGGCTGGGAGATGCAACAGAAATCCTTGTCAATTTTCACATAGCTTACCAACCTCGCCATCCAATGTATACTATAATGCCAATATGACATATAAGCATTCGAAGAAGCCCGATTCGTCCGTTGAGAAGATCGCCAGTTCCTCTGCTAAGAAGGCAATAAATTGCACACCCAAGGCCTTCAAGAAGCCAGAAAATTGTGCACTAAAGGCTGTTGAGTGCAGACCAGAAGCTATATCTGTTGGCTTGGCCAGTTCCTCTGCTAAGAAGGCAATAAATTGCGCACCCAAGGCCTTGAAGAAGCCAGAAAATTGTGCACCAAAGGCTGTTGAGTGCAGACCAGAAGCAGAAGCTATATCTGTTGAGAAGCCAACCAAGTGTGAAGAAAAGGCTGTATTGATTGAAAAGACTGCAGACGTGGAAGATGTGGCCACTATTGCTAAGGCTTCCACTATTGCTAAGGCTTCTGTGGATAAATCACACAGTATTTGCAAATCTTGGATGACTGACAATTGTGTGCATGGTGACTTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACGCTTGCAAAGCTTCATGAACACAACAAGGCAATCACTGGCATTGCACTGCCGGCTGGTTCAAACAAACTTATTTCTGGTAGCACTGACGGCACAGTTCGGGCATGGGACTGCAACACTGGCCATTGTGTTAACATGATCCAACTTGATTCTCAAGTTACCTCACTCATATCTGAGGGCCCATGGATTTTTGCCGGTGTGAAAAATGCTGTGAAGGCATGGAATATTCAGACGGGTGCAGATGTTATTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTTTGAGTCTCCTTTCAAAATGGTTGCAACACTAAGTGGACATAGCAAACCAGTGGTTTGTCTTGCTATTGGATGTCACAAGATGCTTTACTCTGGATCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTCCAGTGCACAATGACACTTAACGGACATACCGACGTTGTCACATCACTTATTTGCTGGGAGAATTACTTGTTATCGGGTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACCAAGGAGGGAACTCTAGAAGTGACATACACTCACACTCACGAAAATGCTGTTCTTGGACTGTATGGGATGACTGATGCAGAGGCCAAGCCAATATTGTTCTGCTCGTGCAAAGATAATTCAGTTCGTATGTATGAATTGCCGACGTTCCTAGAGAGAGGTCGACTATTTACAAGACAAGAAGTTCGATCCTTTCATATAGGCCCTAGCGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTGAATGTGTGGAAATGGTTAGAAGAGGCCAAGGTGCCAACATAG 1527 0.4453 MAIITTTKRTERFRRTTPPTCKYWLAGRCNRNPCQFSHSLPTSPSNVYYNANMTYKHSKKPDSSVEKIASSSAKKAINCTPKAFKKPENCALKAVECRPEAISVGLASSSAKKAINCAPKALKKPENCAPKAVECRPEAEAISVEKPTKCEEKAVLIEKTADVEDVATIAKASTIAKASVDKSHSICKSWMTDNCVHGDLCQNLHSWFYGDGFSTLAKLHEHNKAITGIALPAGSNKLISGSTDGTVRAWDCNTGHCVNMIQLDSQVTSLISEGPWIFAGVKNAVKAWNIQTGADVILDGPKGQVLSLNVGNDILLAGAEDGVIYAWRCSFESPFKMVATLSGHSKPVVCLAIGCHKMLYSGSMDHSIKVWDLDTFQCTMTLNGHTDVVTSLICWENYLLSGSSDCTVNVWVCTKEGTLEVTYTHTHENAVLGLYGMTDAEAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFHIGPSGLFFTGDGTGLLNVWKWLEEAKVPT* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0631 508 Gene3D - 337 507 IPR015943 GO:0005515
Ahy12g0631 508 Gene3D - 138 336 IPR015943 GO:0005515
Ahy12g0631 508 SMART c3hfinal6 182 207 IPR000571 GO:0046872
Ahy12g0631 508 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Ahy12g0631 508 Pfam WD domain, G-beta repeat 377 411 IPR001680 GO:0005515
Ahy12g0631 508 Pfam WD domain, G-beta repeat 337 372 IPR001680 GO:0005515
Ahy12g0631 508 Pfam WD domain, G-beta repeat 215 251 IPR001680 GO:0005515
Ahy12g0631 508 SMART WD40_4 291 328 IPR001680 GO:0005515
Ahy12g0631 508 SMART WD40_4 462 499 IPR001680 GO:0005515
Ahy12g0631 508 SMART WD40_4 212 251 IPR001680 GO:0005515
Ahy12g0631 508 SMART WD40_4 418 459 IPR001680 GO:0005515
Ahy12g0631 508 SMART WD40_4 334 372 IPR001680 GO:0005515
Ahy12g0631 508 SMART WD40_4 375 412 IPR001680 GO:0005515
Ahy12g0631 508 PANTHER - 14 506 IPR044715 -
Ahy12g0631 508 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Ahy12g0631 508 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 375 - -
Ahy12g0631 508 ProSiteProfiles Zinc finger C3H1-type profile. 181 208 IPR000571 GO:0046872
Ahy12g0631 508 ProSitePatterns Trp-Asp (WD) repeats signature. 359 373 IPR019775 -
Ahy12g0631 508 PRINTS G protein beta WD-40 repeat signature 238 252 IPR020472 -
Ahy12g0631 508 PRINTS G protein beta WD-40 repeat signature 399 413 IPR020472 -
Ahy12g0631 508 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Ahy12g0631 508 SUPERFAMILY WD40 repeat-like 196 499 IPR036322 GO:0005515
Ahy12g0631 508 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 251 - -
Ahy12g0631 508 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 14 506 - -
Ahy12g0631 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 411 IPR001680 GO:0005515
Ahy12g0631 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 381 IPR001680 GO:0005515
Ahy12g0631 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 260 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0631 Ahy-Chr12 10216954 10220001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0631 306 463 Miscellaneous Gene Families AT5G08390 26.994 3.74e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy12g0631 WD40 0.0014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0631 - - ahf:112726849 764.222