Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0580 ATGGTGAAGCATCAACCTCGTAGCACCTTGGATCTAAGTCTCTGGTGGTTCTTTGGTGTGTTAGCAATAGTAGTGATGGGTCAAAGAAACAGTAGTGGTGCAACAACACTTCCAACAAGAGTAGTGAAAGTGGGAGCGGTGCTTGATGTTGGTGGAGCAATGGTTGGAAAGATTGGTTTGAACAGCATCAGAATGTGTATCCATGATTTCTATGTGTCTCATCCACATTACAAAACTAGGCTCCAACTCATTCTAAGGGACTCCCAAAGAGACATTGTTACTGCTGCTGCTCAAGCTGTGGATCTTATAAAGAATGAGCAAGTGGTAGCTGTGATAGGACCAATCACAACAATGGAAGCCATGTTTGTGATCAACCTCGGAGATAAAGCGCACGTGCCCATTCTCACGTTCTCAGAAATGAGCCCTTCTCTCTTATCACTCCACACCCCATACTTGTTCCAAATTGCACAGAAAGATTATTATTTAACTCAAGTCGAGGCTATAAGCGCCATTGTTCAAGCTTTTGGGTGGAAACAAGTGGTTCCAATATACGTGGACAACGGTTATGGCGAAGGACTCATTGCATCCCTAACCAATTCATTTCAGAAAGCATACATTCGTGTTCCTTATCTCAGCGCCATTGATTTCTCAGCCACAAATGATGTCATTGAGAGAGAGCTCTACAAGCTCATGACTATGCAAACTAGAGTCTTTGTTGTTCACATGACATTCCGTCTTGCCTCTCGTCTCTTCTCCATTGCCAAAGACATTGGAATGATGGATGAAGGTTATGTTTGGATTGTGACTGCTGGAATTGCTAATCTTTTTAACTCATTGGACTCTTCGGTTATGGAATCCATGGAAGGTGTGTTGGGTGTTAGGCCTTATATTCCAAGAACAAAACAGCTTCTTGATTTTAGAGCTCGATGGAAAAGAGAGTTCTTAAGAGACAATCCAACACTTGTTGATGTTAATTTGGATGTTTTTGGAATATGGGCCTATGATGCTACTGCTGCATTAGCCATGGCAGTTGAGAAGCTTGACAACACTGTTTTCGGCTTCACTAATGTGAGCAACAACTCCAACAACGTGACTGATCTTGAAAACTTAGGCGTTTCACGAGACGGCGAGAAGCTGAGGGAAGCTTTATCAAATGTTAGATTCAAAGGTGTTGGTGGTGAGTTCAAAGTAGTGGGTGGTGGGAAGTTAGAAACATCACCATTTGAGATAGTTAATGTGATTGGTAATAGTGAAAGAAACATTGGATTTTGGACACCACAGAAGGGACTAATCAGAGACATGGATGCAAATAATTCAACTTCTAAGGAGAATCTAAGAGCAATTCTATGGCCAGGGGACTCTTACTCTGTTCCAAAGGGATGGGAAATTCCCACAAATGGTAACAAGTTAAAGATAGGAGTCCCAGTAAAAGATAATGGCTTCTCTGAATTTGTGAAAGTAATCCATGATCCTATTACCAATTCTACAAAGGTCACCGGGTTCTGCATTGATGTGTTTAATGCTGTGGTAGAAGCGTTGCCTTATGCCCTTCCATTTGAATTCATTCCATTTGAAAATTCCAACAATGAGATGGCAGGAACATATGATGATTTGATCACCCAAGTTTATTATGAAAAGTTTGATGCTGTGGTGGGGGACACAACAATTACGGGAAACAGGTCCAAGTATGTCGATTTCACATTGCCGTACACAGAATCTGGTGTGACTATGGTTGTTCCAGTAAGAGACAATAGAAAGAAGAATGCATGGGCCTTCTTGAAGCCATTGACATGGGACCTTTGGGTAACAATATTTTTTACCTTTGTTTTCATAGGATTTGTTGTTTGGGTACTTGAACACCGAATCAATGAATGTTTTAGAGGGCCTATGCCTTATCAAATTGGCACTAGCTTGTGGTTTTCCTTCTCAACCATGGTATTTTCTCATCAAGAGAGAGTGGAGAGCAATTATGGAAGATTTGTGGTGATAGTATGGGTTTTTGTAGTTCAAATTCTGGTTCAAAGCTACACTGCAAGTCTTACCTCTCTCTTAACAGTTGAACGACTACGCCCAGCATTTACAGATGTTCATCAACTCTTAAAGAATCGGTTGAATGTTGGTTATTTGGAAGGTTCTTTTGTTCATGAAATCTTGAAGGATTTGGGGTTCCATGAAAACCAGCTTAAGATATATAAATCTGCAGAAGAATGCAATGATCTCTTCACAAAAGGAAGTGCTAATAATGGCATCGATGCGGCTTTTGACGAAGTCCCTTACGTGATGCACCTTCTTGGAACTTATTGCTCCAAGTATGCCATGGTTGAGCCAAGATTTAAAACTGGTGGCTTTGGCTTTGTGTTTCCAAAAGGGTCACCTCTAGTGGGAGACATATCACGTGCAATCTTGAATGTGAGTGAAGGAGGCAAAATGAGAAGAATTGAGAATGCATGGTTGAATGGAAGCAGTTGTCAAGATTCAAATAACAATGCAGCACAAGTATCTTCTACAAGCCTAGGACTAGAAAGCTTCTGGGGTCTGTTCTTGGTTGTAGGTATTTGTTGCTTATTAGCCCTCGTTATCTTTTTAGCCACATTCATATATCAGCATAGACATATTTTGTTAAACCATAATCTCCCTGATGATAGTAGTTCTATAAGAACACGCATTGGAAAGTTGCTAAATACCTTCCATGAGAGAGATCTAAGCTCCCACACTTTCAAGAAAAGTGATTCAGGCGTAACTTGTAGTCTTACGTCAGCACCAACAAGTGTGTCTTCTTGCCCTCCAATTAGTCCATCTAGTTACACAGGCTCAGGCTTTTCGGGTACTCCAAATACTCAACACAAACCTACACAAGAACCTCCTGTCATTACAACAAAAGGGATACAACCTCTTATTAAGCCACATAGATCCCTCTAG 2919 0.4097 MVKHQPRSTLDLSLWWFFGVLAIVVMGQRNSSGATTLPTRVVKVGAVLDVGGAMVGKIGLNSIRMCIHDFYVSHPHYKTRLQLILRDSQRDIVTAAAQAVDLIKNEQVVAVIGPITTMEAMFVINLGDKAHVPILTFSEMSPSLLSLHTPYLFQIAQKDYYLTQVEAISAIVQAFGWKQVVPIYVDNGYGEGLIASLTNSFQKAYIRVPYLSAIDFSATNDVIERELYKLMTMQTRVFVVHMTFRLASRLFSIAKDIGMMDEGYVWIVTAGIANLFNSLDSSVMESMEGVLGVRPYIPRTKQLLDFRARWKREFLRDNPTLVDVNLDVFGIWAYDATAALAMAVEKLDNTVFGFTNVSNNSNNVTDLENLGVSRDGEKLREALSNVRFKGVGGEFKVVGGGKLETSPFEIVNVIGNSERNIGFWTPQKGLIRDMDANNSTSKENLRAILWPGDSYSVPKGWEIPTNGNKLKIGVPVKDNGFSEFVKVIHDPITNSTKVTGFCIDVFNAVVEALPYALPFEFIPFENSNNEMAGTYDDLITQVYYEKFDAVVGDTTITGNRSKYVDFTLPYTESGVTMVVPVRDNRKKNAWAFLKPLTWDLWVTIFFTFVFIGFVVWVLEHRINECFRGPMPYQIGTSLWFSFSTMVFSHQERVESNYGRFVVIVWVFVVQILVQSYTASLTSLLTVERLRPAFTDVHQLLKNRLNVGYLEGSFVHEILKDLGFHENQLKIYKSAEECNDLFTKGSANNGIDAAFDEVPYVMHLLGTYCSKYAMVEPRFKTGGFGFVFPKGSPLVGDISRAILNVSEGGKMRRIENAWLNGSSCQDSNNNAAQVSSTSLGLESFWGLFLVVGICCLLALVIFLATFIYQHRHILLNHNLPDDSSSIRTRIGKLLNTFHERDLSSHTFKKSDSGVTCSLTSAPTSVSSCPPISPSSYTGSGFSGTPNTQHKPTQEPPVITTKGIQPLIKPHRSL* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0580 972 CDD PBP1_GABAb_receptor_plant 43 430 IPR044440 -
Ahy12g0580 972 Gene3D - 589 727 - -
Ahy12g0580 972 Pfam Receptor family ligand binding region 63 415 IPR001828 -
Ahy12g0580 972 Gene3D - 375 469 - -
Ahy12g0580 972 SMART GluR_14 469 820 IPR001320 GO:0015276|GO:0016020
Ahy12g0580 972 CDD GluR_Plant 468 818 - -
Ahy12g0580 972 Gene3D - 767 825 - -
Ahy12g0580 972 Pfam Bacterial extracellular solute-binding proteins, family 3 495 819 IPR001638 -
Ahy12g0580 972 PIRSF IGluLR_plant 8 927 IPR017103 -
Ahy12g0580 972 MobiDBLite consensus disorder prediction 935 956 - -
Ahy12g0580 972 SUPERFAMILY Periplasmic binding protein-like I 40 462 IPR028082 -
Ahy12g0580 972 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 918 - -
Ahy12g0580 972 Pfam Ligand-gated ion channel 820 853 IPR001320 GO:0015276|GO:0016020
Ahy12g0580 972 Gene3D - 470 588 - -
Ahy12g0580 972 Gene3D - 162 325 - -
Ahy12g0580 972 PANTHER GLUTAMATE RECEPTOR 2.9 42 918 - -
Ahy12g0580 972 SUPERFAMILY Periplasmic binding protein-like II 446 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0580 Ahy-Chr12 9360573 9365668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0580 42 952 Ion Channels AT2G29110 50.596 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0580 K05387 - pvy:116134989 1013.83