Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0537 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCCGGCGGTTCCGCCGCCGCGGCGTCGCGTTCACGGCGGGTTACGGCGGACATCCTGTGGCCAAACCTGAGGAAGCCAGTGAGCAAGTCCGGCAAGAGGAGGGGCGGTGCCGGCGCCGGTGTGGTGGCGGTTGATGATGACTTTGAGGCTGATTTCAGAGAGTTTAAGGATGACTCTGACATCGACGAGGACGAGGATTATGATGTTGATGATGTCGTTGGCGGTGGTTCTGTCAAGGGTTTTGGATCATTCGGTTCAACCAAAACCGCAAAGCCTCAGCTCAAAGCTCGTGGACCTGCTGCTGTGAAATCCATGGAGCCAAGTGGAGAGGTTGAGAAATCTGCTAAGAGAAAGAGGAAGAACCAGTTTCGGGGAATCCGTCAGCGTCCATGGGGGAAATGGGCGGCTGAGATCCGCGACCCGAGAAAAGGTGTTCGTGTCTGGCTTGGGACATTCAGCACTGCTGAAGAAGCCGCAAGGGCTTATGATGCTGAAGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGAGGAGGTTCCGGCTGCATCCTCAAAGAGGTTCAAGCCACATCCCGAAATGCAGCTCCCCAAGGAGAAAATGAACTGTGCTAAGCCCAAACTGAACAACCAGATGTTTGACTTTGGTAACGAACTCGGGGACTTATACTCTCATTTGGATCAGGTGGAACAGAAGCCTCTGATTAACCAATATGCTAACATGGAGTCATTCCCCGGAAATGGACTTTTAAATGCATCTGATGATGTGGCTGCTTATTTCACTTCGGAACACTCGAGCAATTCATTTGAGTATTCCGACCTTTCATGGGGCGAGCAGGGCCCGAAGACTCCCGAGATATCATCCATGCTCTCGGCTCCCGTGGAAGTGCAGGGTGCGGCTAAACAAGAGAAAAACATGGTGCAGCCTAACAACACTCAAGCTGACTCTGTAAAGACACTATCCGAGGAGCTTGCAGATATGGAATCACAGCTAAAGTTCTTCGACACTCCTTACCTCGATGCAAGCTGGAACGATACTTCATTGGAATCCTTCCTTGGTGTGGACTCAACACAGGATGTCGGAAACCCAATGAACCTTTGGAGCTTCGATGACCTCCCTTCCGTGGGAGGCGGAGTCTTCTGA 1182 0.5195 MCGGAIISDFIPGGSAAAASRSRRVTADILWPNLRKPVSKSGKRRGGAGAGVVAVDDDFEADFREFKDDSDIDEDEDYDVDDVVGGGSVKGFGSFGSTKTAKPQLKARGPAAVKSMEPSGEVEKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPEEVPAASSKRFKPHPEMQLPKEKMNCAKPKLNNQMFDFGNELGDLYSHLDQVEQKPLINQYANMESFPGNGLLNASDDVAAYFTSEHSSNSFEYSDLSWGEQGPKTPEISSMLSAPVEVQGAAKQEKNMVQPNNTQADSVKTLSEELADMESQLKFFDTPYLDASWNDTSLESFLGVDSTQDVGNPMNLWSFDDLPSVGGGVF* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0537 393 PANTHER EREBP TRANSCRIPTION FACTOR 1 387 - -
Ahy12g0537 393 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Ahy12g0537 393 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Ahy12g0537 393 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677
Ahy12g0537 393 PANTHER DNA-BINDING DOMAIN 1 387 IPR044808 GO:0003700|GO:0009873
Ahy12g0537 393 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Ahy12g0537 393 CDD AP2 133 191 IPR001471 GO:0003700|GO:0006355
Ahy12g0537 393 MobiDBLite consensus disorder prediction 100 136 - -
Ahy12g0537 393 Gene3D AP2/ERF domain 132 192 IPR036955 GO:0003700|GO:0006355
Ahy12g0537 393 Pfam AP2 domain 134 182 IPR001471 GO:0003700|GO:0006355
Ahy12g0537 393 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0537 Ahy-Chr12 8701290 8704183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0537 1 393 AP2-EREBP Transcription Factor Family AT3G14230 43.301 9.89e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy12g0537 AP2 8.30E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0537 K09286 - gmx:100818646 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0537 12 8701290 8704183 Ahy2g0463 2 6496781 6499696 hybridization