Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0535 ATGGCTTCTTCCCATGCAATAATCCCAGACAAAGCAACACGTAAAAGGAAGATTGAGATCAAAAGAGTTGAACAAAGCAACAAGCGCCACGTCACCTTCTCCAAGAGAAAATTAGGGCTTTTCAACAAGGTCACCGAGCTCTCCATCCTTTGCCAGGCGGAAACCGCCTTGATCGTCTCCTCGCAAATCGGAAAGCTTTACGCCTGCGGATATCCATCGCCGGACGCCGTGATCCACCGTTTCCTCTCCGGAGGAGATTCCAATTCTGGTTCTGGTTCCGCTCTTCCGCACACGAACACCGTAGGTGCCTTGAAGAAGAAGCAAGAGGAGAAAGTGGAAGCCCTAAGAGCACAATATGAGTCTTTGGAAGAATCTCTCAAAGAAGAGAAGAAGCGACTCGAAGAGGCTGAGAATGCAAGAAAGAACATGAACAACAATGGCGGTTGCTTAGGGTTTTCATCGCAGTGGTGGGAGAATCCAATTGATGATATGGATTTGGAGGAGCTCGTTAAGTTCAAAGAATCCTTGGAACAGTTGAAGGTTAACCTATTTGCAACCGCTGAAAAGAAGATCATGTTCCAAGAATTGATGCCATCACCACCACTTGCTTCTTCTTCTTCAATTATGCCTCCAATGCAAACTAGGGTTCCCAATTTTTATTCAAACTTGAACAATAATGGTGGATTCAATGCTGTTCATCATCCACAACAGCAAGAACATTGGAATTATGCTGCTTCTTCTTCTTCTTCTAATTTTTATTCAAACTTGAAGAATAATGTTGGATTCAACGCGGTTCATCATCCACAACAACAAGCACATTGGGATTATTGGACCAATAATGGAATTGCTAGCAGTAACAATCAGAATTCTTTAGGATCATGCGATTTTGGGAACAATACTATAATTGCTGCTGCTAATGGTAATGGAAATAGTAGTTGTTCCTTTTTTCCTAGCATTGGTTTTGGCCATTATTAA 975 0.4256 MASSHAIIPDKATRKRKIEIKRVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETALIVSSQIGKLYACGYPSPDAVIHRFLSGGDSNSGSGSALPHTNTVGALKKKQEEKVEALRAQYESLEESLKEEKKRLEEAENARKNMNNNGGCLGFSSQWWENPIDDMDLEELVKFKESLEQLKVNLFATAEKKIMFQELMPSPPLASSSSIMPPMQTRVPNFYSNLNNNGGFNAVHHPQQQEHWNYAASSSSSNFYSNLKNNVGFNAVHHPQQQAHWDYWTNNGIASSNNQNSLGSCDFGNNTIIAAANGNGNSSCSFFPSIGFGHY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0535 324 PANTHER MADS BOX PROTEIN 10 193 - -
Ahy12g0535 324 SUPERFAMILY SRF-like 14 83 IPR036879 GO:0003677|GO:0046983
Ahy12g0535 324 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 68 IPR002100 GO:0003677|GO:0046983
Ahy12g0535 324 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Ahy12g0535 324 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Ahy12g0535 324 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Ahy12g0535 324 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Ahy12g0535 324 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Ahy12g0535 324 Coils Coil 105 146 - -
Ahy12g0535 324 Gene3D - 26 108 IPR036879 GO:0003677|GO:0046983
Ahy12g0535 324 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 10 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0535 Ahy-Chr12 8620149 8621342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0535 11 207 Type I MADS-box Gene Family AT5G60440 32.323 3.00e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy12g0535 SRF-TF 5.70E-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0535 - - ahf:112729126 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0535 12 8620149 8621342 Ahy2g0460 2 6427757 6428909 hybridization