Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0530 ATGGATTCAAAACCATTCCAAGAGATTTTCATCAACCAAAACTGTAACCACTCATTCTGTGATGAATGCATTGCAAAATATGTGGCTGCAAAGATTCAAGAGAATATATCAAATGTGAAGTGTCCTGAACCAAAATGCAGAGGAATATTGGAGCCTCAGAATTGCATGTCAATAATTCCAAAGGAGGTGTTTGAAAGATGGGAAAATGCACTTTGTGAGAATCTTGTTCTTGCAACATCAAAGAAATTCTATTGCCCTTTCAAGGATTGTTCAGCAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTTCTGAGTGTTCACATTGTCATAGATTGTTCTGTGCACAGTGTAAAGTTGCATGGCATGGTGGAATGGAATGTGGTGAGTTTATGGGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGCTAAGAGATGGAGAAGGTGTGGCCATCGCTTCTGCTTGTGGAAAGCCATGGAATCACAACAACAACAAGTAGATGATGAGGTTGTTGAAGGAAAAGTAGTAGGGGGGAAGGGAAGCCAGACAGTTGCTTGA 588 0.398 MDSKPFQEIFINQNCNHSFCDECIAKYVAAKIQENISNVKCPEPKCRGILEPQNCMSIIPKEVFERWENALCENLVLATSKKFYCPFKDCSAMLVNDDGNEVVTCSECSHCHRLFCAQCKVAWHGGMECGEFMGLNENEREKEDLMVMNLAKAKRWRRCGHRFCLWKAMESQQQQVDDEVVEGKVVGGKGSQTVA* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0530 195 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 161 IPR031127 GO:0004842|GO:0016567
Ahy12g0530 195 SMART ibrneu5 65 129 IPR002867 -
Ahy12g0530 195 Pfam IBR domain, a half RING-finger domain 65 129 IPR002867 -
Ahy12g0530 195 ProSiteProfiles TRIAD supradomain profile. 1 195 IPR044066 -
Ahy12g0530 195 ProSitePatterns Zinc finger RING-type signature. 15 24 IPR017907 -
Ahy12g0530 195 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 161 - -
Ahy12g0530 195 Gene3D - 83 135 - -
Ahy12g0530 195 SUPERFAMILY RING/U-box 65 132 - -
Ahy12g0530 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Ahy12g0530 195 SUPERFAMILY RING/U-box 2 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0530 Ahy-Chr12 8588596 8590174 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0530 14 164 C3H Transcription Factor Family AT2G31770 24.419 3.81e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0530 K11975 - gmx:100816161 252.292