Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0528 ATGGATTCAAAACCATTCCAAGAGATTTTCATCAACCAAAACTGTAATCACTCATTCTGTGATGAATGCATTGCAAAATATGTAGCTGCAAAGATTCAAGAGAATATATCAAATGTGAAGTGTCCTGAACCAAAATGCAGAGAAATATTGGAGCCTCAGAATTGCATGTCAATAATTCCAAAGGAGGTGTTTGAAAGATGGGAGAATGCACTTTGTGAGAATCTTGTTCTTGCAACATCAAAGAAATTCTATTGCTCTTTCAAGGATTGTTCAACAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTTCTGAGTATCCAAATTGTCATAGATTGTTCTGTGCACAGTGTAAAATTGCATGGCATGGTGGAATGGAATGTGGTGAGTTTATGGGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGATAAGAGATGGAGAAGGTGTGGCCATCGCTTCTGCTATGCTTGTGGAAAGCCATGGAATCAGTAA 522 0.3755 MDSKPFQEIFINQNCNHSFCDECIAKYVAAKIQENISNVKCPEPKCREILEPQNCMSIIPKEVFERWENALCENLVLATSKKFYCSFKDCSTMLVNDDGNEVVTCSEYPNCHRLFCAQCKIAWHGGMECGEFMGLNENEREKEDLMVMNLAKDKRWRRCGHRFCYACGKPWNQ* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0528 173 SMART ibrneu5 65 129 IPR002867 -
Ahy12g0528 173 Pfam IBR domain, a half RING-finger domain 65 129 IPR002867 -
Ahy12g0528 173 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 160 IPR031127 GO:0004842|GO:0016567
Ahy12g0528 173 ProSiteProfiles TRIAD supradomain profile. 1 173 IPR044066 -
Ahy12g0528 173 SUPERFAMILY RING/U-box 2 74 - -
Ahy12g0528 173 ProSitePatterns Zinc finger RING-type signature. 15 24 IPR017907 -
Ahy12g0528 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Ahy12g0528 173 SUPERFAMILY RING/U-box 65 132 - -
Ahy12g0528 173 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0528 Ahy-Chr12 8565389 8566515 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0528 10 170 C3H Transcription Factor Family AT2G19610 22.280 2.92e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0528 K11975 - gmx:100815626 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0528 12 8565389 8566515 Ahy2g0459 2 6412196 6414304 hybridization