Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0524 ATGGATTCAAAACCATTCCAAGAGATTTTCATCAACCAAAACTGTAACCACTCATTCTGTGATGAATGCATTGCAAAATATGTAGCTGCAAAGATTCAAGAGAATATATCAAATGTGAAGTGTCCTGAACCAAAATGCAGAGGAATATTGGAGCCTCAGAATTGCATGTCAATAATTCCAAAGGAGGTGTTTGAAAGATGGGAGAATGCACTTTGTGAGAATCTTGTTCTTGCAACATCAAAGAAATTCTATTGCTCTTTCAAGGATTGTTCAACAATGTTGGTGAATGATGATGGGAATAAAGTTGTGACTTGTTCTGAGTGTCCAAATTGTCATAGATTGTTTTGTGCACAGGGTAAAGTTGCATGGCATGGTGGGATGGAATGTGGTGAGTTTATGGGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGCTAATAAGAGATGGAGAAGGTGTTCTAAATGCAGAATCTATGTTGAAAAAAAATCAGGGATGTTCACACATTTCTTGCAGGTGTGGCCATCGCTTCTGCTATGCTTGTGGAAAGCCATGGAATCAGTAATTCAGTACCATGGTTGTACATAA 609 0.3777 MDSKPFQEIFINQNCNHSFCDECIAKYVAAKIQENISNVKCPEPKCRGILEPQNCMSIIPKEVFERWENALCENLVLATSKKFYCSFKDCSTMLVNDDGNKVVTCSECPNCHRLFCAQGKVAWHGGMECGEFMGLNENEREKEDLMVMNLAKANKRWRRCSKCRIYVEKKSGMFTHFLQVWPSLLLCLWKAMESVIQYHGCT* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0524 202 Pfam IBR domain, a half RING-finger domain 65 129 IPR002867 -
Ahy12g0524 202 SUPERFAMILY RING/U-box 65 132 - -
Ahy12g0524 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
Ahy12g0524 202 ProSitePatterns Zinc finger RING-type signature. 15 24 IPR017907 -
Ahy12g0524 202 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 187 - -
Ahy12g0524 202 SUPERFAMILY RING/U-box 2 74 - -
Ahy12g0524 202 ProSiteProfiles TRIAD supradomain profile. 1 202 IPR044066 -
Ahy12g0524 202 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 187 IPR031127 GO:0004842|GO:0016567
Ahy12g0524 202 SMART ibrneu5 65 129 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0524 Ahy-Chr12 8475490 8476637 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0524 10 172 C3H Transcription Factor Family AT2G19610 22.222 1.10e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0524 K11975 - gmx:100816161 252.292