Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0518 ATGGGTTATGGCCCAGAAGATGAAAATGCTGTTCTGGAGAAATGTCCTGAACCAAAATGCAAAGGAATATTGGAGCCTCAGAATTGCATATCAATAATTCCAAAGGAAGTGTTTGAAAGATGGGAGAATGCACTTTGTGAGAATCTTGTTCTTGCAACATCAAAGAAATTCTATTGCCCTTTCAAGGATTGTTCAGCAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTCCCGAGTGTCCACATTGTCATAGATTGTTCTGTGCACAGTGTAAAGTTGCATGGCATGGTGGAATGAAATGTGGTGAGTTTATGAGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGCTAAGAGATGGAGAAGGTGTTCTAAATGCAGAATCTATGTTGAAAAGAATGAGGGATGTTCGCACATTTCTTGCAGCTGCAAAGATTCAAGAGAATATATATCAAATGTGAAGTGTCCTGAACCAAAATGCAGAGGGATATTGGAGCCTCAGAATTGCATGTCAATAATTCCAAAGGAAGTGTTTGAAAGATGGGAGAATGCACTTTGTGAGAATCTTGTTCTTGCAACATCAAAGAAATTCTATTGCCCTTTCAAGGATTGTTCAGCAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTTCTGAGTGTCCACATTATCATAGATTGTTCTATGCACAGTGTAAAGTTGCATGGCATGGTGGATTGGAATGTGGTGAGTTTATGAGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATCAATCTTGCAAAGGCTAAGAGATGGAGAAGGTGTTCTAAATACAGAATTTATGTTGAAAAGAATGAGGGATGCTCATACATTTCTTGCAGGTTTGGTTAA 915 0.3814 MGYGPEDENAVLEKCPEPKCKGILEPQNCISIIPKEVFERWENALCENLVLATSKKFYCPFKDCSAMLVNDDGNEVVTCPECPHCHRLFCAQCKVAWHGGMKCGEFMSLNENEREKEDLMVMNLAKAKRWRRCSKCRIYVEKNEGCSHISCSCKDSREYISNVKCPEPKCRGILEPQNCMSIIPKEVFERWENALCENLVLATSKKFYCPFKDCSAMLVNDDGNEVVTCSECPHYHRLFYAQCKVAWHGGLECGEFMSLNENEREKEDLMVINLAKAKRWRRCSKYRIYVEKNEGCSYISCRFG* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0518 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 53 IPR013083 -
Ahy12g0518 304 SUPERFAMILY RING/U-box 39 106 - -
Ahy12g0518 304 Gene3D - 106 182 - -
Ahy12g0518 304 SUPERFAMILY RING/U-box 189 256 - -
Ahy12g0518 304 Pfam IBR domain, a half RING-finger domain 39 103 IPR002867 -
Ahy12g0518 304 Pfam IBR domain, a half RING-finger domain 189 253 IPR002867 -
Ahy12g0518 304 ProSiteProfiles TRIAD supradomain profile. 1 183 IPR044066 -
Ahy12g0518 304 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 8 153 - -
Ahy12g0518 304 Gene3D - 57 105 - -
Ahy12g0518 304 SUPERFAMILY RING/U-box 114 154 - -
Ahy12g0518 304 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 8 153 IPR031127 GO:0004842|GO:0016567
Ahy12g0518 304 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 162 303 IPR031127 GO:0004842|GO:0016567
Ahy12g0518 304 SMART ibrneu5 39 103 IPR002867 -
Ahy12g0518 304 SMART ibrneu5 189 253 IPR002867 -
Ahy12g0518 304 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 162 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0518 Ahy-Chr12 8441421 8444050 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0518 130 302 C3H Transcription Factor Family AT2G19610 25.000 9.90e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0518 K11975 - egr:104437955 294.664