Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy12g0516 | ATGGAGGGAAGTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCAAAGTCTTTTTCTGATGTAGATGATTCACTACTCTTAGTTGATGATTTCTACTTTTCAGCCCTCTTTGATTCTGAAGAATTATTCCCAATCAATGATGAGAAATATGCAGAGGAACTACATTTACAAGAGGCTCTATATTCTTCTGCTATAAGCCTCAAGAGAAAACTCAAAGAGGTTCATTCTGAATCTTCTACTCATCAATCTCATCATCGTCATCATTATCTTCGTGATGATCAAGTAGTCTTGTGTGCTATTTGCATGGATTCAAAACCATCCAAAGAGATTTTCATCAACCAAAACTGCAACCACTCATTCTGTGATGAATGCATTGCAAAATATGTAGCTGCAAAGATTCAAGAGAATATATCACATGTGAAGTGTCCTGAACCAAAATGCAGAGAAATCATGGAGCCTCAGAATTGCATGTCAATAATTCCAAAGGAAGTGTTTGAAAGATGGGAGAATGCACTTTGTGAGAATCTGGTTCTTGCAACATCAAAGAAATTCTATTGCCCTTTCAAGGATTGTTCAGCAATGTTGGTGAATGATGATGGGAGTGAAGTTGTGACTTGTTCTGAGTGTCCAAATTGTCATAGATTGTTCTGTGCACAGTGTAAAGTTCCATGGCATGGTGGAATGGAATGTGGTGAGTTTATGAGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGATAAGAGATGGAGAAGCTGCAAAGATTCAAGAGAATATATATCAAATATGAAGTGTCCTGAACCAAAATGCAGAGGAATATTGGAGCCTCAGAATTGCATGTCAATAATTCCAAAGGAAGTGTTTGAAAGATGGGAGAATGCATTTTGTGAGAATCTTGTTCTTGCAACATCAAGGAAATTCTATTGCTCTTTCAAGGATTGTTCAACAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTTTTGAGTGTCCAAATTGTCATAGATTGTTCTGTGCACAGTGTAAAGTTGCATGGCATGGTGGAATGGAATGTGGTGAGTTTATGGGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGAAGAGGCTAAGAGATGGAGAAGGTGTGGCCATCGCTTCTGCTATGCTTGTCACTACTAG | 1200 | 0.3767 | MEGSSSSSSSSSLSKSFSDVDDSLLLVDDFYFSALFDSEELFPINDEKYAEELHLQEALYSSAISLKRKLKEVHSESSTHQSHHRHHYLRDDQVVLCAICMDSKPSKEIFINQNCNHSFCDECIAKYVAAKIQENISHVKCPEPKCREIMEPQNCMSIIPKEVFERWENALCENLVLATSKKFYCPFKDCSAMLVNDDGSEVVTCSECPNCHRLFCAQCKVPWHGGMECGEFMSLNENEREKEDLMVMNLAKDKRWRSCKDSREYISNMKCPEPKCRGILEPQNCMSIIPKEVFERWENAFCENLVLATSRKFYCSFKDCSTMLVNDDGNEVVTCFECPNCHRLFCAQCKVAWHGGMECGEFMGLNENEREKEDLMVMNLEEAKRWRRCGHRFCYACHY* | 400 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy12g0516 | 399 | ProSiteProfiles | TRIAD supradomain profile. | 93 | 371 | IPR044066 | - | |
| Ahy12g0516 | 399 | SMART | ibrneu5 | 295 | 359 | IPR002867 | - | |
| Ahy12g0516 | 399 | SMART | ibrneu5 | 165 | 229 | IPR002867 | - | |
| Ahy12g0516 | 399 | SUPERFAMILY | RING/U-box | 295 | 362 | - | - | |
| Ahy12g0516 | 399 | Pfam | IBR domain, a half RING-finger domain | 295 | 359 | IPR002867 | - | |
| Ahy12g0516 | 399 | Pfam | IBR domain, a half RING-finger domain | 165 | 229 | IPR002867 | - | |
| Ahy12g0516 | 399 | SUPERFAMILY | RING/U-box | 91 | 174 | - | - | |
| Ahy12g0516 | 399 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 63 | 266 | - | - | |
| Ahy12g0516 | 399 | Gene3D | - | 183 | 235 | - | - | |
| Ahy12g0516 | 399 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 264 | 390 | - | - | |
| Ahy12g0516 | 399 | SUPERFAMILY | RING/U-box | 165 | 232 | - | - | |
| Ahy12g0516 | 399 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 63 | 266 | IPR031127 | GO:0004842|GO:0016567 | |
| Ahy12g0516 | 399 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 264 | 390 | IPR031127 | GO:0004842|GO:0016567 | |
| Ahy12g0516 | 399 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 179 | IPR013083 | - | |
| Ahy12g0516 | 399 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 306 | IPR013083 | - | |
| Ahy12g0516 | 399 | ProSiteProfiles | Zinc finger RING-type profile. | 97 | 145 | IPR001841 | - | |
| Ahy12g0516 | 399 | ProSitePatterns | Zinc finger RING-type signature. | 115 | 124 | IPR017907 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy12g0516 | Ahy-Chr12 | 8427626 | 8433030 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy12g0516 | 95 | 249 | C3H Transcription Factor Family | AT2G31770 | 26.875 | 2.63e-10 | 60.1 |