Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0513 ATGTTTCAGTTTCATCCACAAGGAACTCAAAAACAGAGTTGTACTCTGCTTGCTGTCACCGGTGGCTCTGAGCAGAAGCTGCCACCACCACAGGATCAGCTCAATTATCCATTCCCTCAGCTGGTTTCTTCAGGGCGTCTTGAGGTTCAAGTCCTGAGCAATCCTGATAAGGAGCAGTTTCGGAAAGTTCTGGATACATATCAGCCAAATTTTGTTTACTTACAAGGGGAGCAGCTAGCCAATGGTGAAGTTGGTTTGCTGGTTTGGCAGGGTGTGAAATTGTCTAATCCTGACGATATAACAGAGCTCTTTGGTTCCACATTGCCAACTGCTGTTTATTTAGAAATACCAAATGGAGAAGATTTTGCAGAGGCTCTTCATGTTAAGGGAATTCCGCATGTGATATTCTGGAAGAATGCGTTTTCTTATTTTGCTGCATGCCATTTTCGTCAAGCATTTCTTTCAGTGGTCCAGAGTTCATCTACACATACATGGGATGCTTTCCATCTTGCACGTGCCTCTTTTGAGTTTTACTGTGTTCAAAACAGCCATGTACTTCCTACCGACAGCAATGATGCTGATAGTGAGATGGGGCCACACCTTATGGGTGACTGTCTCAAAATTAACATTGACCCTCCTGAGGTGGCCGAAGAAGATGACGACGATGATGAAAATTCCTCAGGCGATCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTCATTTGTGGTGCACCTTCTGGCGTTGACGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGTGCTCTCTTAACTATTGAAATCCGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCACCCCCACCACCTCTTCAGGCAGCTGCTTTTTCTCGTGGAGTTGTTACCATGCGATGTGATATATCTACCTGTAGTTCAGCACATATCTCTCTTCTGGTATCAGGCAGTGCACAAACGTGTTTCAACGATCAGATTTTGAGACAGCTAGCACCTGATATTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAGGGGTTGCCTGTAGCATCTTTTGAGAAAGATGATGCTGAGCGCTTACTTTTCTTCTATCAAGGCTGTGATAAAGATAGCTATGCAAACAATACGATTTTCAGCAGTCCTCCTGGTTGGTTGAAACCACCCCCTCCTACTAGAAAGAGGTATGAACCAACCCAAGGAGCAAGTCTTGCCCTTCATGATGGCGCCTTTGCAGGGGATGGTGCTGTTCGAAAAGTAGATGAAGAAGAAAGGGATGGGAAAATGGCAAATGGGATCAGCACACCCTTAACTCCAGCCAGGCAGAGATTGAAAGTATCAGCAATGAGGCCAATTCCTCATGTTCGTCGCCATAGAATGACACCTTTTAGTGGACCTTCTCAGACAGATGGTTTTGATGGTGCCCCAGTTGAGCCTCATTTGCCTATTGTTGTCCCTGCAAAGAGGAGTAGCATTGGATCAACTTCTGCATCACAGAGAAAATCATTTTTAGGAGCCGCCCAGTCTAAGCAGGTTATTTCATTGAACCCATTGCCTTTGAAGAAACATGGTTGTGGCAGAGGCCCAGTACAGACCTGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTTTAATTATTCGGGGACATAACCGATTGATTCCCCAAGGAGGCCTTGCCGAGTTCCCTGATGCTATACTCAATGGAAAACGCCTTGATCTTTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGAGTTGGAAATACACTTAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCACATGATGATGTGGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGTATATGTGGCGAGTGGGCGCACTTTGGATGTGACAGAAGACAGGGGCTAGGGGCATTCAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCACTGTAGTGTTACAAATTTCAAGAAGAAACAAAGTGTTGCTAATGGGTATTCTCAAGGGTCAATGTCGTCGCGACCCCTTTGA 2172 0.4443 MFQFHPQGTQKQSCTLLAVTGGSEQKLPPPQDQLNYPFPQLVSSGRLEVQVLSNPDKEQFRKVLDTYQPNFVYLQGEQLANGEVGLLVWQGVKLSNPDDITELFGSTLPTAVYLEIPNGEDFAEALHVKGIPHVIFWKNAFSYFAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNSHVLPTDSNDADSEMGPHLMGDCLKINIDPPEVAEEDDDDDENSSGDLPAIKIHDDEVNLRFLICGAPSGVDESLLRSLEDGLSALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQILRQLAPDISYRSLVALGIASIQGLPVASFEKDDAERLLFFYQGCDKDSYANNTIFSSPPGWLKPPPPTRKRYEPTQGASLALHDGAFAGDGAVRKVDEEERDGKMANGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSQTDGFDGAPVEPHLPIVVPAKRSSIGSTSASQRKSFLGAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLIIRGHNRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQSVANGYSQGSMSSRPL* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0513 723 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 330 IPR042293 -
Ahy12g0513 723 ProSiteProfiles ARID domain profile. 537 641 IPR001606 GO:0003677
Ahy12g0513 723 CDD PHD_ARID4_like 647 698 - -
Ahy12g0513 723 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 330 - -
Ahy12g0513 723 SMART ARID_2 534 637 - -
Ahy12g0513 723 Pfam ARID/BRIGHT DNA binding domain 540 637 IPR001606 GO:0003677
Ahy12g0513 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 704 IPR013083 -
Ahy12g0513 723 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 328 713 IPR042293 -
Ahy12g0513 723 SUPERFAMILY ARID-like 537 652 IPR036431 GO:0003677
Ahy12g0513 723 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 328 713 - -
Ahy12g0513 723 CDD ARID 539 637 - -
Ahy12g0513 723 Gene3D - 535 640 IPR036431 GO:0003677
Ahy12g0513 723 SUPERFAMILY FYVE/PHD zinc finger 633 701 IPR011011 -
Ahy12g0513 723 SMART bright_3 538 642 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0513 Ahy-Chr12 8370446 8377650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0513 4 712 ARID Transcription Factor Family AT3G43240 52.583 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy12g0513 ARID 2.80E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0513 - - csv:101214243 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0513 12 8370446 8377650 Ahy2g0455 2 6360173 6367357 hybridization