Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0456 ATGGCTAGAAGTGCCACAATTCCATTTCCAATACTTGATTTCATTCCTGTTGGATTCAGGTTCAAGCCAACAGATGAAGAGCTTGTGAGCTATTACCTCAATCACAAGCTCCTAAATGACAATTTTCCAATCGATATTATCCCTGACATTGATCTTTGCAAGGTTGAACCTTGGCAAATTCCAGCATTATCAAAGGTAAAATCGGATGATCCAGAATGGTTTTTCTTTAGTGGACGTGATTACAAGTATGGAAAGAGCAAAAGATCAAACAGGGCAACCAAAGGAGGATATTGGAAAGCCACAGGACAAGATAGATTCATAAAGGAAAGAGGAACTATGAATGTAATTGGGAGCAAGAAGACACTTGTTTTCTATAGTGGCCGTGTTCCTAATGGTGTCAAAACCAATTGGGTTATCCATGAGTATCATGCTACTACCTTTGATGATAGCCAGAGGAATTTTGTTTTGTGTCGCTTGATGAAGAAAGTCGAGAGAAAATCCGAAGATGGAACTGATGCACAAGCCTGTGATGAGGGGGAACCTAGCACTCACATGGAAGAAGCAGATGAGAGTGTCTCAACTATGTTTGATTCGCCAGATGTGGACATGGATTCAATCTTCCACACACTGCCTCAAGACAGATCATCATCACAGCATTCTCCAGTCGGCATTGAACAGCAAGAATCCTTCCCATTCTCCCCATCTGAAAATTATTACCTTGTAAATGAAGATAGCAGTATGCATATACAATTCGAAACAAACGAAGAGAAGCAAGATGCTGAGAAATTTGCGGATTCGATTTTGGATAGTGGCAATATAGCTATGTTTGAAGAAAGACAGCAGCATCATACTTTCATGAATAATCACCTCCGCTCGGTCCCATCGATGAGGGTATGCTATGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTAGACGGGCTGATTCAAGAGAATACCATGTATCAAAAATGGTTCAATCATCACATAGTGCTGCGCGCACAGATAAAACTAGAAGTATCTCTTCAGAAGACTTTTGGGGAGTGGATTCATCTTCATGTGACTCAAATGCAGATAAACCTTTTGAGATCAATTCTATTGAAATTTCTAGTCCTCCACCGGCTCTAAGTGGATCGAAAAATCAATATAATCCGAGACTATCTCAAACACATAGGAAGGTTTCAAGCAATGCAATTCCCAATCTTGAGGATAAGAAGAAATTGACCACTGTGGAACAATCAAGAAGAGATCAAGAAAAAGCTCGAAAAACTAGTCCAGGAAAGAAGTTAGAAACCAGAAGCTCTGATGTTAATAGAATTGGTAGTTTCATCCACCTAGAGCCGTGTTCGTCGAGCGAAAGCCTGACTCCACGAGCGGTATACCTTGTTAATGTAGTTATTGGGATTTTGTTGCTTCTAGCCATTAGTTGGGATGTGCTATCTTGTTAG 1446 0.4053 MARSATIPFPILDFIPVGFRFKPTDEELVSYYLNHKLLNDNFPIDIIPDIDLCKVEPWQIPALSKVKSDDPEWFFFSGRDYKYGKSKRSNRATKGGYWKATGQDRFIKERGTMNVIGSKKTLVFYSGRVPNGVKTNWVIHEYHATTFDDSQRNFVLCRLMKKVERKSEDGTDAQACDEGEPSTHMEEADESVSTMFDSPDVDMDSIFHTLPQDRSSSQHSPVGIEQQESFPFSPSENYYLVNEDSSMHIQFETNEEKQDAEKFADSILDSGNIAMFEERQQHHTFMNNHLRSVPSMRVCYESSDTDAEVVSRRADSREYHVSKMVQSSHSAARTDKTRSISSEDFWGVDSSSCDSNADKPFEINSIEISSPPPALSGSKNQYNPRLSQTHRKVSSNAIPNLEDKKKLTTVEQSRRDQEKARKTSPGKKLETRSSDVNRIGSFIHLEPCSSSESLTPRAVYLVNVVIGILLLLAISWDVLSC* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0456 481 MobiDBLite consensus disorder prediction 364 396 - -
Ahy12g0456 481 ProSiteProfiles NAC domain profile. 15 162 IPR003441 GO:0003677|GO:0006355
Ahy12g0456 481 Gene3D NAC domain 24 167 IPR036093 GO:0003677|GO:0006355
Ahy12g0456 481 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 13 424 - -
Ahy12g0456 481 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 13 424 - -
Ahy12g0456 481 MobiDBLite consensus disorder prediction 167 191 - -
Ahy12g0456 481 MobiDBLite consensus disorder prediction 167 196 - -
Ahy12g0456 481 MobiDBLite consensus disorder prediction 404 432 - -
Ahy12g0456 481 MobiDBLite consensus disorder prediction 321 340 - -
Ahy12g0456 481 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Ahy12g0456 481 SUPERFAMILY NAC domain 14 162 IPR036093 GO:0003677|GO:0006355
Ahy12g0456 481 MobiDBLite consensus disorder prediction 211 236 - -
Ahy12g0456 481 MobiDBLite consensus disorder prediction 364 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0456 Ahy-Chr12 7117558 7121435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0456 12 162 NAC Transcription Factor Family AT4G35580 56.410 1.46e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy12g0456 NAM 1.10E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0456 - - adu:107473112 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0456 12 7117558 7121435 Ahy12g0456 12 7117558 7121435 ECH
Ahy12g0456 12 7117558 7121435 Ahy2g0409 2 5664331 5668142 hybridization