Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0440 ATGGCTCCATCATTAGAGAGCAATAAAAATGTTGTTATTGATGATGAATCCAATAAGAATCTTCTTAAAGAAGAAGAAGAAGATGGAATGCTTTTTGCAATGGACTTGGGGATTTTAGTGGCGTTTCCAATGGCTGTTAAGACTGCATTTGAGCTTGGAATCTTCGACATAATGGCCAAAGGTGGTGAACATGCAAAGCTCTCATCTGAAGACATTGCATCACAGATTGGTAGCATAAACCCTAATGCACCATCGATGGTGGATCGCCTTCTTAGGCTCCTTGCAAGTCATTCTTTGTTGTCTTGTTCATCACTTCCTCAAGTCACCAAAGATGAAAATGATCAAGAACATGAGCTTATTGCATCTCCTCAGAAGATTGTGTATAGTCTTACAGCTGCTGCTTCCAAATATTTTGTGAGTGATGATGATGGTGTCAATTTTGGACACAGTTTGAGCTTGATTCTGGATAAGGTTTTCTTGGAAAGCTGGAGTGAACTGAAAGGAGCAATATTGGAAGGAGGTGTGCCATTTGTCAGGGCTAATGGGATGCATGCATTTGAGTACCCAAGTGTGGATCCAAGGTTCAATGATGTGTTCAACAAAGCTATGATAAGCCACACAACCATAGTGATGAAGAGGGTTCTTGAGTCCTATGAAGGTTTCAACAACATTAACACTCTAATTGATGTTGGTGGTGGTCTTGGTTTCAATCTCAAAATGATCACTTCCAAATATCCAAATATCAATGCTATTAACTTTGACTTGCCTCATGTCATTCAACATGCCCTCACCTATCCCGGTGTGAAACATGTGGGAGGAGATATGTTTGAGAGTGTTCCTAACGGAGATGCCATTTTCATGAAGTGCATACTTCATGATTGGAGTGATGAACATTGCTTGAAGGTGTTGAAGAATTGCCATAGAGCCATTCCTGAAGATGGAAAAGTGATTGTTGTAGACACAATGGTTCCGGTTTTTCCGGAGAATAAAACCGCCGCTAAGGTTGCTTTCAAAGCTGACTTATTGATGATGACTCAAAACATTGGAGGAAAAGAGAGAACCAAACATGACTTCATTCATTTGGCCACTGCTTCTGGATTTTCTTCCATCAAATTTGTGTGCTCTGTCTCTGGATATTGGGTTATGGAGTTCTACAAGTAG 1161 0.404 MAPSLESNKNVVIDDESNKNLLKEEEEDGMLFAMDLGILVAFPMAVKTAFELGIFDIMAKGGEHAKLSSEDIASQIGSINPNAPSMVDRLLRLLASHSLLSCSSLPQVTKDENDQEHELIASPQKIVYSLTAAASKYFVSDDDGVNFGHSLSLILDKVFLESWSELKGAILEGGVPFVRANGMHAFEYPSVDPRFNDVFNKAMISHTTIVMKRVLESYEGFNNINTLIDVGGGLGFNLKMITSKYPNINAINFDLPHVIQHALTYPGVKHVGGDMFESVPNGDAIFMKCILHDWSDEHCLKVLKNCHRAIPEDGKVIVVDTMVPVFPENKTAAKVAFKADLLMMTQNIGGKERTKHDFIHLATASGFSSIKFVCSVSGYWVMEFYK* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0440 386 Gene3D - 12 138 IPR036388 -
Ahy12g0440 386 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 34 386 IPR016461 GO:0008168
Ahy12g0440 386 PANTHER O-METHYLTRANSFERASE 1 386 IPR016461 GO:0008168
Ahy12g0440 386 Pfam Dimerisation domain 44 95 IPR012967 GO:0046983
Ahy12g0440 386 SUPERFAMILY "Winged helix" DNA-binding domain 24 106 IPR036390 -
Ahy12g0440 386 CDD AdoMet_MTases 226 319 - -
Ahy12g0440 386 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 386 - -
Ahy12g0440 386 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 145 385 IPR029063 -
Ahy12g0440 386 PIRSF O-mtase 12 386 IPR016461 GO:0008168
Ahy12g0440 386 Pfam O-methyltransferase domain 163 368 IPR001077 GO:0008171
Ahy12g0440 386 Gene3D Vaccinia Virus protein VP39 139 386 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0440 Ahy-Chr12 6792104 6796162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0440 16 386 Monolignol Biosynthesis Gene Families AT5G54160 48.248 3.58e-125 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0440 K13066 - aip:107624476 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0440 12 6792104 6796162 Ahy12g0440 12 6792104 6796162 ECH
Ahy12g0440 12 6792104 6796162 Ahy2g0398 2 5383996 5387990 hybridization