Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0430 ATGGATGATGAGGTTCAAGCTTTTACCATTGCTGCTGCTCAGAACGATGACGGTGCAAGCACATCCAGAATGAAAGGGGAGCAAATCGCGAAAAACGAGGACTGTAACGGTAACGGTGGCGGTGAGGAAGTGATTAGGTGGGAGAAGATTCTGGCGCGGAGGGTGGTTAGGGTTTTGGTGGTTGAAGCTGATAACTCTACCCGCCACATCATCACTGCTATTCTTCGAAAATGCAGTTATTCAGTTATTGCTGTTTCTGATGGATTAAAGGCATGGGAAGTATTGAAGAAGAAAGCAACAGACCTAGATCTCATCTTAACAGAAGTGGATTTGCCCGCAATATCCGGATTTGCACTCATTACTTTAATCATGGAACATGATTTTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCAAGATTCGGTTAACATGGTGTTGAAATGCATGCTAAAAGGTGCAGTCGATTTTCTTATAAAGCCTGTTCGGAGGAATGAGCTTAAGAACTTATGGCGGCATGTATGGAGAAGGCACGCTATTGACAAGCCCCCTCAAAATACGACATTTCCAATGGAAAAACTTAAGACTGTTTCGCAAGACAATTCTACAAGCAATCAGTCTAGTGCTTTTGTGGCTTCTTTGCAAGAAAATAATGGATGTGGTGAAAATTTGAGTGAAGCTCATAGCACTTGCACTTCGTCATTTTTGGAAGCTGAGAACGCATGCATGGAAAAACGGCAAGATGCCTCTGAACTGAAATTGAATAATGTTGATGTCGTGCACCATGAGGTGTCCATCAACCATGAAAGTAAATCAAGTAAGCATAATGATGAAATAGAGAGATCAGTGGGACTTGTATCAGAGTCTGCAATCTGCAACAAATCTCTTAAATCGACAGATTTAATGATAGAAAGAGACCATTGTTTTGCTGAAATCAAAAGCCAAGATGAAGTTCTAAGAGCTGAATCAAGCAGAGCCAATCCTAATATTAATGTAGGGATTCATGGTTGTACCGGTTCAGTGGTGGAGCCCTCTAGAGGAGCTACTGACTGGATGATTGACACATTTGAGAATATCGAAAAACCTATCAATGAAAACTGTAGTTATAGTGGTGATAATACAACCAAGTCTGTTTCAGATACAAAAATGGAACTTTTGTTAAGAAGTGATCTTTCTGATGGCTCATGTAAACAAGCTAGTGAGATAACTGAGGAAAGACAAAGATTGAAACATTCGGACACGTCTGCTTTTTCTAGGTATAGCGGTCATAAATTGTTGCAGCCTTCTTTCCCGTTACCTTTGATTACCTCTTCCAAAGTAACCAACAATGATCAAAATTCTCAAGAATCTCATAAATCATCTGGAAATACTCTAGATACTTGTCAGTATGGAAGCACAGGCAAAAATGAAGAGAACAGGTCCACTCTGGTCATTGGTCAGTATGGACAATTCGAACCAAAATCATCAAGCAATGAATGTGGACTCTTCCCTTTCAGCAAGGCTACTTCTGATATTAAGTCTAAGGAACATTGTAACATTTTATCCTCTACCGGTCAGAGTTCGGGTAACAGTTTATCTTCTGATGCTGCAAAACATAAAAGTAGTATCGCCTATGAAAGCGTAGGCAGTGGAAGTGATGGAAATGATACTTCGAATGTGGTACCCAAGAACAATCCTGAAACTTTTAGCGAGTGTGTTCGCCAAAACTATGATGGATTTGGAGGAACAAACTTTCATCACTTTAGTCAAAGACAAGCGGCCCTAACAAAGTTTCGACTAAAGCGAAAACAGAGATCCTATGGGAAAAAGGTTCGATACGAAACCAGGCAAAGATTGGCCGAGCAGCGCCCTCGAGTGAAAGGGCAGTTTGTCCGTAAAGTACTAGATGGTGATCTGGTACCTGACTCTGGTGGCAATTCGTAA 1923 0.4082 MDDEVQAFTIAAAQNDDGASTSRMKGEQIAKNEDCNGNGGGEEVIRWEKILARRVVRVLVVEADNSTRHIITAILRKCSYSVIAVSDGLKAWEVLKKKATDLDLILTEVDLPAISGFALITLIMEHDFCKNIPVIMMSSQDSVNMVLKCMLKGAVDFLIKPVRRNELKNLWRHVWRRHAIDKPPQNTTFPMEKLKTVSQDNSTSNQSSAFVASLQENNGCGENLSEAHSTCTSSFLEAENACMEKRQDASELKLNNVDVVHHEVSINHESKSSKHNDEIERSVGLVSESAICNKSLKSTDLMIERDHCFAEIKSQDEVLRAESSRANPNINVGIHGCTGSVVEPSRGATDWMIDTFENIEKPINENCSYSGDNTTKSVSDTKMELLLRSDLSDGSCKQASEITEERQRLKHSDTSAFSRYSGHKLLQPSFPLPLITSSKVTNNDQNSQESHKSSGNTLDTCQYGSTGKNEENRSTLVIGQYGQFEPKSSSNECGLFPFSKATSDIKSKEHCNILSSTGQSSGNSLSSDAAKHKSSIAYESVGSGSDGNDTSNVVPKNNPETFSECVRQNYDGFGGTNFHHFSQRQAALTKFRLKRKQRSYGKKVRYETRQRLAEQRPRVKGQFVRKVLDGDLVPDSGGNS* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0430 640 Gene3D - 56 321 - -
Ahy12g0430 640 ProSiteProfiles Response regulatory domain profile. 57 175 IPR001789 GO:0000160
Ahy12g0430 640 PANTHER PRR RESPONSE REGULATOR 42 253 - -
Ahy12g0430 640 Pfam CCT motif 584 626 IPR010402 GO:0005515
Ahy12g0430 640 PANTHER TWO-COMPONENT RESPONSE REGULATOR 255 516 IPR045279 GO:0009736
Ahy12g0430 640 PANTHER TWO-COMPONENT RESPONSE REGULATOR 516 615 IPR045279 GO:0009736
Ahy12g0430 640 ProSiteProfiles CCT domain profile. 584 626 IPR010402 GO:0005515
Ahy12g0430 640 SUPERFAMILY CheY-like 57 183 IPR011006 -
Ahy12g0430 640 PANTHER PRR RESPONSE REGULATOR 516 615 - -
Ahy12g0430 640 SMART REC_2 56 171 IPR001789 GO:0000160
Ahy12g0430 640 MobiDBLite consensus disorder prediction 436 469 - -
Ahy12g0430 640 PANTHER TWO-COMPONENT RESPONSE REGULATOR 42 253 IPR045279 GO:0009736
Ahy12g0430 640 Pfam Response regulator receiver domain 58 169 IPR001789 GO:0000160
Ahy12g0430 640 PANTHER PRR RESPONSE REGULATOR 255 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0430 Ahy-Chr12 6554705 6558617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0430 567 627 Response Regulator Gene Family AT5G24470 60.317 2.24e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Ahy12g0430 Response_reg 6.70E-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0430 K12130 - gmx:100791698 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0430 12 6554705 6558617 Ahy2g0387 2 5211935 5215820 hybridization