Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0424 ATGTCTCATTACGCTAATAATGCTGAACTTGTTTTCTATTCATTCATGGGGCGGGCCTTTGTTTTCTTGCTGTGTATTATTAATCACATACATCATATCTCCCAAAAATTAAAAGAAAAAAAATTATTCCAGATGGTGGATTGTAACAACAATACAAGGAAACACAATGATTCAAGTTCTAACAAAATATTTGTTGGAGGGTTGGCTTGGGAGACTCAAAAGGAGACACTGAGAAGATATTTTGAGCAATTTGGAGATATTATAGAGGCTGTTGTCATAACAGACAAGAACACTGGAAGGTCCAAGGGTTATGGCTTTGTCACATTCAAGGATCCAGAGGCAGCAAAGAAAGCATGCCAAAATCCATCTCCAATAATTGATGGGAGAAGGGCAAATTGTAATATTGCATCAACTGCTGCAAACAAGAAACACTCACAAACTCCTCAACATGAAAGGTTTAAACCAGTGGCTGGAATATTGGCTTCCCCTTCTCATCATCATTTTGTTCCTTCATCAACATTTTTCCATCAACCTAATGAACAATTCAGAATTCCTTATCCAACTTATAGATATAATGGATACTCACAAGAAACAATGGTCCCTATGAATTGTTATGCTATCTATGGAGGTCAACAATTCTCACCTTACTACCCTTCCAATAATGGGGCAATAGGGCCATTAGGGTTTATCCCTAATATTTACCCTTTGAATGCTCAATATGCACATAGATATCATAGTCATCAAGGTCATGGTTTTAGGGTTCAATATCCACAAATGATGCAAATTCCAGTTTTACCCCCTAGAAGACCATATGGCTCACCTGGTATCTTGACTTTTCCTCCTTCAATGCCACCACCACCAATTACTAATTCAGTGACAAGAACTGCTACTAAAAAAACAGAAGTGGCAACAAGAAAAGGTGCAAGTGCTTCAAGACCCAAAAGAACTTCTTCTATCTAA 960 0.376 MSHYANNAELVFYSFMGRAFVFLLCIINHIHHISQKLKEKKLFQMVDCNNNTRKHNDSSSNKIFVGGLAWETQKETLRRYFEQFGDIIEAVVITDKNTGRSKGYGFVTFKDPEAAKKACQNPSPIIDGRRANCNIASTAANKKHSQTPQHERFKPVAGILASPSHHHFVPSSTFFHQPNEQFRIPYPTYRYNGYSQETMVPMNCYAIYGGQQFSPYYPSNNGAIGPLGFIPNIYPLNAQYAHRYHSHQGHGFRVQYPQMMQIPVLPPRRPYGSPGILTFPPSMPPPPITNSVTRTATKKTEVATRKGASASRPKRTSSI* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0424 319 PANTHER BOULE-RELATED 38 289 IPR037366 GO:0003729
Ahy12g0424 319 PANTHER - 38 289 - -
Ahy12g0424 319 MobiDBLite consensus disorder prediction 289 319 - -
Ahy12g0424 319 SMART rrm1_1 62 134 IPR000504 GO:0003723
Ahy12g0424 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 121 IPR000504 GO:0003723
Ahy12g0424 319 Gene3D - 30 152 IPR012677 -
Ahy12g0424 319 SUPERFAMILY RNA-binding domain, RBD 50 142 IPR035979 GO:0003676
Ahy12g0424 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 138 IPR000504 GO:0003723
Ahy12g0424 319 MobiDBLite consensus disorder prediction 279 319 - -
Ahy12g0424 319 CDD RRM_RBM24_RBM38_like 62 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0424 Ahy-Chr12 6498949 6508161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0424 57 137 C2H2 Transcription Factor Family AT2G19380 44.444 1.42e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0424 - - ahf:112729575 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0424 12 6498949 6508161 Ahy12g0424 12 6498949 6508161 ECH
Ahy12g0424 12 6498949 6508161 Ahy2g0381 2 5165967 5171411 hybridization