LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy12g0414	ATGAATAAGCAACCTGGAATTGCTTCTCTTTGTGCACGTGCTGGTATACAAGAAGTGCATTTTCTTCCTTTCAATCCAACTGATAAGAGGACTACATTGACCTATATTGATCAAGATGGTAAAATGTATAGAGTAAGCAAAGGTGCACCCGAACAGATCCTACACTTTGCCCACAACAAATCAGACATCAAACGCAGAGTTCATGCAGTGATTGATAAGTTTGCAAAGCGCGGTCTGCGATCTCTTGCTGTAGCATACCAGGAAGTTTCCGATGGAAGGAAAGAAAGTGCTGGAGGCCCATGGCAGTTTATTGGCCTTATTCCCCTCTTTGACCCACCTAGGCATGATAGTGCCGAAACAATACGGAGGGCACTAAATCTCAGAGTAAATGTCAAAATGATTATAGAATTTGGGCAACACAAAGACAAGGATGAATTCATTGCTGACTTGCCTATTGATGAACTAATCGAAAAAGCAGATGGATTTGTTGGTGTATTTCCTGAACACAAGTATGAGATTGTGAAGCGTTTGCAAGTGAGGAAACATATATGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCTCTAAAGAAGGCAGACATTGGTATAGCTGTCGCCAATGCCACGGATGCTGCTCGTAGTGCATCTGATATTGTTTTAACAGAACCTGGTCTTAGTGTTATCATAAGTGCTTGCTAG	702	0.4217	MNKQPGIASLCARAGIQEVHFLPFNPTDKRTTLTYIDQDGKMYRVSKGAPEQILHFAHNKSDIKRRVHAVIDKFAKRGLRSLAVAYQEVSDGRKESAGGPWQFIGLIPLFDPPRHDSAETIRRALNLRVNVKMIIEFGQHKDKDEFIADLPIDELIEKADGFVGVFPEHKYEIVKRLQVRKHICGMTGDGVNDAPALKKADIGIAVANATDAARSASDIVLTEPGLSVIISAC*	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy12g0414	233	Pfam	haloacid dehalogenase-like hydrolase	40	201	-	-
	Ahy12g0414	233	PRINTS	P-type cation-transporting ATPase superfamily signature	187	206	-	-
	Ahy12g0414	233	PRINTS	P-type cation-transporting ATPase superfamily signature	210	222	-	-
	Ahy12g0414	233	PRINTS	P-type cation-transporting ATPase superfamily signature	105	116	-	-
	Ahy12g0414	233	SUPERFAMILY	HAD-like	35	232	IPR036412	-
	Ahy12g0414	233	Gene3D	-	12	110	IPR023299	GO:0000166
	Ahy12g0414	233	PANTHER	PLASMA MEMBRANE ATPASE	12	232	-	-
	Ahy12g0414	233	PRINTS	H+-transporting ATPase (proton pump) signature	67	85	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Ahy12g0414	233	PRINTS	H+-transporting ATPase (proton pump) signature	187	203	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Ahy12g0414	233	PRINTS	H+-transporting ATPase (proton pump) signature	218	233	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Ahy12g0414	233	Gene3D	-	111	134	IPR023214	-
	Ahy12g0414	233	Gene3D	-	141	224	IPR023214	-
	Ahy12g0414	233	PANTHER	CALCIUM-TRANSPORTING ATPASE	12	232	-	-
	Ahy12g0414	233	TIGRFAM	ATPase_P-type: HAD ATPase, P-type, family IC	17	231	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy12g0414	Ahy-Chr12	6260497	6261853	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy12g0414	12	233	Primary Pumps ATPases	AT5G62670	77.328	4.14e-127	380

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy12g0414	K01535		-	ahf:112729570	468.003

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy12g0414	12	6260497	6261853	Ahy12g0414	12	6260497	6261853	ECH