Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0388 ATGGGTCATGGAGAAAAGATCAGTCCAAGGAGCTTCCATTTGCATCGCCACCTCCTCCAACATGGTGAGAAGAACAACAACAACATCAACAACAACAGTAGCAACAAAGTGTTTAAGGATGTTATTCCAAAAGGGTTTATGGCAATAAAGGTAGGTCAAGGTGAAGAACAACAAAGGTTTGTTGTTCCTGTTATATACTTCAACCACCCACTCTTCATGCAATTATTGAAGGAAGCTGAAGAAGAGTATGGTTTTGATCAGAAAGGAACCATAACTATACCTTGCCATGTTGAAGAATTCAGGAACGTTAGCGGCTTGATTGATAGGGAAAAGAGTTTCCATAATCATCATCATCATCATCACCATGTTGGTTGCTTTGGTTTTTAA 387 0.3928 MGHGEKISPRSFHLHRHLLQHGEKNNNNINNNSSNKVFKDVIPKGFMAIKVGQGEEQQRFVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVSGLIDREKSFHNHHHHHHHVGCFGF* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0388 128 Pfam Auxin responsive protein 31 104 IPR003676 GO:0009733
Ahy12g0388 128 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 40 124 IPR003676 GO:0009733
Ahy12g0388 128 PANTHER SMALL AUXIN-UP RNA-RELATED 40 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0388 Ahy-Chr12 5714697 5715752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0388 3 101 Calmodulin-binding Proteins AT3G43120 40.404 1.57e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0388 K14488 - mnt:21406213 152.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0388 12 5714697 5715752 Ahy12g0388 12 5714697 5715752 ECH
Ahy12g0388 12 5714697 5715752 Ahy2g0359 2 4648885 4656728 hybridization