Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0386 ATGGAATATGCAACATATTCATCAGCAGCAGAAGTTTGTGAAGGTGTTGAAACTCCACCAGCACCAGCAGCATCATCTTCATCAATTTCATCCATGATGATTTGTAAGAAGAAGAAGAACATCAACAGCAACAATACAAGGAGGTTCAGTGATGATCAAATCAAGTCATTGGAATCAATATTTGAGACTGAGTCAAGGCTTGAGCCAAAGAAGAAGCTTCAACTTGCAAGGGAGCTTGGTTTGCAGCCAAGACAAGTTGCTATTTGGTTTCAGAACAAGAGAGCAAGGTGGAAGTCAAAGCAACTTGAGAGAGATTACACCATTCTCAGAAACAATTACAACAATTTGGCTTCAAGGTTTGAGTCACTCAAGAAGGAGAAACAAGCATTATTAATTCAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCATCAATGGAGAAGAAAACTCAGAGCATAGACAGTGAATCAGAAAATGGTGACACAACAAAGAGTGGTAGTGAACTTAAGGTCAAACCAATAAGCCAATCATCAATGGCAGCAAGATCATCAGAACATGCAGTTCTTTGTGGTGGTGGTGGTGGTGGTGGTGCTCTTTCAGATGATGACACAAGCATCAAAGTTGAGTACTTTGGAAACTTGGAAGATGGGCTTGTGAATTTTGCTCATGATCATGGTGATGGGTCTTTGACATCACCAGAAGATTGGGGTCATTTTGATTCTGATGATCTTTTAGGCCAATCAACCAGTGATTACCAATGGTGGGACTTTTGGTCCTGA 780 0.4064 MEYATYSSAAEVCEGVETPPAPAASSSSISSMMICKKKKNINSNNTRRFSDDQIKSLESIFETESRLEPKKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYTILRNNYNNLASRFESLKKEKQALLIQLQKLNDLIQKPSMEKKTQSIDSESENGDTTKSGSELKVKPISQSSMAARSSEHAVLCGGGGGGGALSDDDTSIKVEYFGNLEDGLVNFAHDHGDGSLTSPEDWGHFDSDDLLGQSTSDYQWWDFWS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0386 259 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 28 259 - -
Ahy12g0386 259 PRINTS Lambda-repressor HTH signature 71 80 IPR000047 GO:0003677
Ahy12g0386 259 PRINTS Lambda-repressor HTH signature 80 96 IPR000047 GO:0003677
Ahy12g0386 259 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 259 IPR045224 GO:0003700
Ahy12g0386 259 SUPERFAMILY Homeodomain-like 25 102 IPR009057 -
Ahy12g0386 259 Pfam Homeobox associated leucine zipper 100 141 IPR003106 GO:0006355|GO:0043565
Ahy12g0386 259 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981|GO:0006355
Ahy12g0386 259 Pfam Homeodomain 47 98 IPR001356 GO:0003677
Ahy12g0386 259 SMART HOX_1 43 104 IPR001356 GO:0003677
Ahy12g0386 259 Coils Coil 92 140 - -
Ahy12g0386 259 Gene3D - 26 105 - -
Ahy12g0386 259 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
Ahy12g0386 259 MobiDBLite consensus disorder prediction 143 170 - -
Ahy12g0386 259 CDD homeodomain 47 101 IPR001356 GO:0003677
Ahy12g0386 259 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0386 Ahy-Chr12 5606048 5607808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0386 12 259 Homeobox Transcription Factor Family AT2G46680 49.254 1.73e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy12g0386 Homeodomain 2.00E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0386 K09338 - gmx:100811208 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0386 12 5606048 5607808 Ahy12g0386 12 5606048 5607808 ECH
Ahy12g0386 12 5606048 5607808 Ahy2g0357 2 4564447 4566217 hybridization