Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0343 ATGGAGCTACAAACAACGGCCACCACCACCGCCACCACTTCAACCGTAACCGCCGCCACAAAATCCACCATAAACCGCGTAGGAGGAACGCGCCACCCTGTCTACCGCGGCGTCAGGAAGCGTCGATGGGGAAAATGGGTTTCGGAGATTCGAGAACCTCGCAAGAAGTCTCGCATATGGCTCGGTTCCTTCCCGTCGCCGGAGATGGCGGCGAAAGCCTACGACGTCGCCGCTTACTTCCTCAAAGGCCGAAAAGCGCAGCTCAATTTTCCCGACGAGGTTCACCGTCTTCCGCCGCTTCCTCCTCCGTCGTCATGCACCGCACGTGACATCCAAGCCGCAGCTGCAAAAGCAGCACACATGGCCGCCGCCGCCGCCGCCGCAGCAGCCGTGACTGCCGATGACGCCGGCGATTCGCCGGAGAAGTGCGGCATTTCGAATTCTTCCTCCGACGGCGATGATTTCTGGGGAGAAATTGAGCTGCCTGAGCTCATGAACGATGGAGAGTGCAGATGGAGTTATTCTCACGGCGGCGGTGGGTGGAACTCCGGCGGCTCCGCTGGCTCCGGCGACGTAACGGCTTGGCCGGAAGTTGAGTTACCGTATAGTGGTTAG 615 0.6033 MELQTTATTTATTSTVTAATKSTINRVGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPSPEMAAKAYDVAAYFLKGRKAQLNFPDEVHRLPPLPPPSSCTARDIQAAAAKAAHMAAAAAAAAAVTADDAGDSPEKCGISNSSSDGDDFWGEIELPELMNDGECRWSYSHGGGGWNSGGSAGSGDVTAWPEVELPYSG* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0343 204 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Ahy12g0343 204 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Ahy12g0343 204 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Ahy12g0343 204 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Ahy12g0343 204 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Ahy12g0343 204 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Ahy12g0343 204 SUPERFAMILY DNA-binding domain 34 93 IPR016177 GO:0003677
Ahy12g0343 204 MobiDBLite consensus disorder prediction 181 204 - -
Ahy12g0343 204 CDD AP2 35 92 IPR001471 GO:0003700|GO:0006355
Ahy12g0343 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 201 - -
Ahy12g0343 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0343 Ahy-Chr12 4949817 4950628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0343 12 182 AP2-EREBP Transcription Factor Family AT1G01250 57.222 1.65e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy12g0343 AP2 5.60E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0343 K09286 - gmx:100806544 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0343 12 4949817 4950628 Ahy12g0343 12 4949817 4950628 ECH
Ahy16g1231 16 22785356 22786120 Ahy12g0343 12 4949817 4950628 PCT
Ahy6g0190 6 2356878 2357749 Ahy12g0343 12 4949817 4950628 PCT
Ahy12g0343 12 4949817 4950628 Ahy16g1231 16 22785356 22786120 PCT
Ahy12g0343 12 4949817 4950628 Ahy6g0190 6 2356878 2357749 PCT