Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0335 ATGGTCGGTTCGGTTTTCAGAACCTTGGTCAGAATGATTTCAGCTATTTCGTGGATACCGATTGGTGCTTCGAAGGCAGAACCCACCGTAGCTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACCACCGCCGCCGCCAGTACAGCAGACAGTGAAAATGAGGAAGAAGCAGGGGATGAACGCATGGATGATGCCGGTGGCGCCGTCGATGAAGTTGCGCGAGCACTCAATGTTGCTGATGCTCTCGGGAAGGCTGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATGAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCTGAGGAACTCGAAGACATGATCATTAATCCAACTGATTCCGTCATTGTTTGTGCTCGTACTGAGGACGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGTCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAGAAAAAGAAGAAGGGGAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAAAGTTCAGGAATGTACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGGAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCATGAACCAAAATTTCTTCTTAGTGGTTCATTTGATCATACTGTGGTCCTGAGGGATGGAAGGACGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTAACCACGATTTTGTGGTGAGTCTCGAGGATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAACGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAATGTGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAACAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTTTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAAGAAGAATAGAACTCGGTCGTGA 1488 0.4449 MVGSVFRTLVRMISAISWIPIGASKAEPTVAEPPSKEEIQDIITTAAASTADSENEEEAGDERMDDAGGAVDEVARALNVADALGKADKLDDIALGLKELDMEHYDDEDEGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDVGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLAWNKKFRNVLASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHHEPKFLLSGSFDHTVVLRDGRTPSHPGYKWSVTADVESLAWDPHTNHDFVVSLEDGTVKCFDVRTATSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYKKNRTRS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0335 495 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Ahy12g0335 495 SMART WD40_4 339 378 IPR001680 GO:0005515
Ahy12g0335 495 SMART WD40_4 250 292 IPR001680 GO:0005515
Ahy12g0335 495 SMART WD40_4 389 429 IPR001680 GO:0005515
Ahy12g0335 495 SMART WD40_4 434 474 IPR001680 GO:0005515
Ahy12g0335 495 SMART WD40_4 295 335 IPR001680 GO:0005515
Ahy12g0335 495 SMART WD40_4 188 227 IPR001680 GO:0005515
Ahy12g0335 495 Pfam Anaphase-promoting complex subunit 4 WD40 domain 258 316 IPR024977 -
Ahy12g0335 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 297 - -
Ahy12g0335 495 Gene3D - 344 491 IPR015943 GO:0005515
Ahy12g0335 495 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 487 - -
Ahy12g0335 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Ahy12g0335 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 438 IPR001680 GO:0005515
Ahy12g0335 495 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 12 487 IPR044285 GO:0006364
Ahy12g0335 495 SUPERFAMILY WD40 repeat-like 210 480 IPR036322 GO:0005515
Ahy12g0335 495 Pfam WD domain, G-beta repeat 393 429 IPR001680 GO:0005515
Ahy12g0335 495 ProSitePatterns Trp-Asp (WD) repeats signature. 279 293 IPR019775 -
Ahy12g0335 495 PRINTS G protein beta WD-40 repeat signature 461 475 IPR020472 -
Ahy12g0335 495 PRINTS G protein beta WD-40 repeat signature 416 430 IPR020472 -
Ahy12g0335 495 PRINTS G protein beta WD-40 repeat signature 279 293 IPR020472 -
Ahy12g0335 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 396 434 - -
Ahy12g0335 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 441 483 IPR001680 GO:0005515
Ahy12g0335 495 Gene3D - 100 342 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0335 Ahy-Chr12 4823036 4830512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0335 276 489 U-box Gene Family AT2G33340 30.493 1.51e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0335 K14791 - gmx:100807947 701.434