Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0311 ATGGAACAAGTTAGTATTGTTGGTGAGTTAATGCAAGGAAAGGAGTTAGCAAAGAAGCTCTTTGACCATTTGAATTCACCATCACCATCATTATCATCATCCTCCTCCTCTTCATCATCATCATCACATGAATCTAATGAAGCTTTGATAGAGAAGATACTTTCAACCTATGAGAAAGCACTCACCATGCTCAATAACACCAACTTCATGAAGGATTCTTCTCATTGTTCATCTTCTTCTCTTGCAAATGGCAGCACAAAAAGTGAGGTCTTGGATAAAGAGGATGTTGCAAAGCACAAACAAGTGTCCAAGAAAAGAAAGACTATGTCAATGTGGACAAAGCAAGTGAGGGTGTGTTTGGGAACAGAGCTTGATGGTTCTATGGAAGATGGCCATAGCTGGAGAAAATATGGACAGAAGGACATTCTTGGAGCCAAGTTTCCAAGAGGATATTTCAGATGTACACATAGACATGTACAAGGTTGTTTGGCCACAAAACAAGTTCAAAAATCAGATGAAGATCCAAATGTGTTGGAAATAACCTACAAAGGAAGACACACTTGCATTCAAGTTAGTCATCACTCAAAAAAACCAACAATTTCAAAACCAAACATGGCCTTATTATTAGAAGAACAAACCAAGAATCATCAACCAACACAAAAAGAGATGAAAACAGAACAACCCCATGAAACAATTCTCACATTTGGAACATCACAAGAACTTGAAGTCAAACTTGATGACTTTGACTTTGACTTTGACCCTGACACAAAGGAGAACATTTTCTCTTCACTTTGCTTCACTTCCCCATCAATAGTTTCTGAAAATGATGAAGACAACAACAAAATGTTCTCTTACATTGAAAGCTTTTCTCCTGAATTCATATCACCAACAACAAATTCAGAATCAAACAACATTTTCCACTTTAATGATGGACTAGGCCTATGTGTTCAAACCTCAGATTCTGATTTTAGTGATAATGTTTCAGCACCAACTTCATCAGTCTCTAATTCATCAATAGAAGGCTTGGATTTTCACTCCTTTGATGAAAAGGTGGATTTTGATAATTATTACTCCATAAACTCCTAG 1086 0.3674 MEQVSIVGELMQGKELAKKLFDHLNSPSPSLSSSSSSSSSSSHESNEALIEKILSTYEKALTMLNNTNFMKDSSHCSSSSLANGSTKSEVLDKEDVAKHKQVSKKRKTMSMWTKQVRVCLGTELDGSMEDGHSWRKYGQKDILGAKFPRGYFRCTHRHVQGCLATKQVQKSDEDPNVLEITYKGRHTCIQVSHHSKKPTISKPNMALLLEEQTKNHQPTQKEMKTEQPHETILTFGTSQELEVKLDDFDFDFDPDTKENIFSSLCFTSPSIVSENDEDNNKMFSYIESFSPEFISPTTNSESNNIFHFNDGLGLCVQTSDSDFSDNVSAPTSSVSNSSIEGLDFHSFDEKVDFDNYYSINS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0311 361 Gene3D WRKY domain 100 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy12g0311 361 SUPERFAMILY WRKY DNA-binding domain 127 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy12g0311 361 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g0311 361 MobiDBLite consensus disorder prediction 25 44 - -
Ahy12g0311 361 ProSiteProfiles WRKY domain profile. 128 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g0311 361 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 2 355 - -
Ahy12g0311 361 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g0311 361 MobiDBLite consensus disorder prediction 24 44 - -
Ahy12g0311 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 355 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0311 Ahy-Chr12 4442333 4445531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0311 38 192 WRKY Transcription Factor Family AT5G24110 47.742 5.55e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy12g0311 WRKY 6.90E-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0311 12 4442333 4445531 Ahy17g2646 17 123364369 123366056 ECH
Ahy12g0311 12 4442333 4445531 Ahy12g0311 12 4442333 4445531 ECH
Ahy16g1206 16 22075241 22076944 Ahy12g0311 12 4442333 4445531 PCT
Ahy6g0210 6 2659828 2661516 Ahy12g0311 12 4442333 4445531 PCT
Ahy12g0311 12 4442333 4445531 Ahy16g1206 16 22075241 22076944 PCT
Ahy12g0311 12 4442333 4445531 Ahy6g0210 6 2659828 2661516 PCT