Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0236 ATGGTATATGTTAAGGCCCAGAAATCTAAGGCCTACTTCAAGAGGTATCAAGTAAAGTTTAAGAGAAGAAGAGAGGGAAAGACCGATTACAGGGCCAGGATTCGGTTGATTAACCAGGACAAGAACAAATACAACACTCCAAAGTATCGCTTTGTTGTGCGATTCACAAACAAGGATATTGTTGCACAAATAACATCGGCTAGCATTGCTGGTGATATTGTTCTTGCAGCAGCTTATTCTCATGAATTACCCCGCTATGGTCTTGAAGTAGGCCTTACTAACTATGCTGCAGCTTATTGCACTGGACTTCTCCTTGCTCGTCGAGTCCTTAAGATGCTTGAAATGGACGAGGAGTATCAAGGAAATGTCGAGGCTACTGGTGAGGATTTCTCTGTTGAGCCTGCTGATACCAGGAGGCCATTCCGTGCTCTTCTTGATGTTGGTCTTATCAGGACCACAACTGGAAACCGTGTGTTCGGTGCCCTTAAGGGAGCTTTGGATGGGGGTTTGGATATCCCTCACAGTGAAAAGAGGTTTGCTGGTTTTGACAAAGAGAAGAAGGAGCTTGATCCCGAAGTTCACCGCAAGTATATCTTTGGTGGACATGTTGCTTCTTACATGAGGACTTTGCAGGAAGATGAACCTGAGAAATACCAGTCACATTTCAGTGAATATATCAAGCGAGGAATAGAGGCTGATGGAATTGAGACTCTGTACAAAAAGGTTCATGCTGCCATTCGTGCTGATCCTACCATCAAGAAGTCAGGGAAACCTGCTCCTAAGGAGCACAAGAGGTACAACCTCAAGAAGCTTACCTATGAGGAGAGGAAGAATAAGTTGATTGCACGCTTGCAGGCTCTCAACTCTGCTGCAGGTGGGGATGAAGATGATGATGAGGATGACGATTGA 909 0.4499 MVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQITSASIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEEYQGNVEATGEDFSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSEKRFAGFDKEKKELDPEVHRKYIFGGHVASYMRTLQEDEPEKYQSHFSEYIKRGIEADGIETLYKKVHAAIRADPTIKKSGKPAPKEHKRYNLKKLTYEERKNKLIARLQALNSAAGGDEDDDEDDD* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0236 302 Coils Coil 270 290 - -
Ahy12g0236 302 SUPERFAMILY Translational machinery components 11 252 - -
Ahy12g0236 302 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy12g0236 302 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 299 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy12g0236 302 Gene3D - 1 291 - -
Ahy12g0236 302 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy12g0236 302 CDD Ribosomal_L18_L5e 41 170 - -
Ahy12g0236 302 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Ahy12g0236 302 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy12g0236 302 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy12g0236 302 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy12g0236 302 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy12g0236 302 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy12g0236 302 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ahy12g0236 302 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0236 Ahy-Chr12 3519896 3522479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0236 1 292 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 83.904 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0236 K02932 - gmx:100818819 530.02