Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0191 ATGTCCTCTTTCTTTTCCTCTCCTCCACCGCCTCCACTGCCACCACCACCACCATCCGCCGCCGCCGCCGCCTACGTCACCAACCTCGGATTCGGTTACTCCATAGCCATAGCACTCGGCTTCCTCTTCCTCCTCTCCACAATCATCCTCTCTTCCTACCTCTGCTGCCGCGCTCTCCGCCACAACAACGACAACAATAACCGCCGCAGGAACCAAAACGACGGTGTCGTTTTGCCGCGTGTCATTTTCGTAGCTGAGAACGACGTTGAAAATAACCAGCCTGGTGGAGGAAACGACAGCGCCGTTTTGGGTCTGGACCAGATCGTAATTAACTCGTACCCTAAGTTTCAGTTTAACGGCAACAACGACGTCGATGTTGACAGCGTGTGTTCGATTTGTTTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCGGAGTGTCACCACTGCTTCCACGTGTCATGTCTTGATTCGTGGCTCAAGCTTAATGGTTCTTGCCCTGTTTGCCGGAACTCTCCGATGCCGACGCCGCTACCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCTCTATGCCGCTGATAGGAGGGGAAGGAGTTGA 606 0.5495 MSSFFSSPPPPPLPPPPPSAAAAAYVTNLGFGYSIAIALGFLFLLSTIILSSYLCCRALRHNNDNNNRRRNQNDGVVLPRVIFVAENDVENNQPGGGNDSAVLGLDQIVINSYPKFQFNGNNDVDVDSVCSICLCEYKDSEMLRMMPECHHCFHVSCLDSWLKLNGSCPVCRNSPMPTPLPTPLQEVVPLSLYAADRRGRS* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0191 201 SUPERFAMILY RING/U-box 122 177 - -
Ahy12g0191 201 SMART ring_2 130 171 IPR001841 -
Ahy12g0191 201 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Ahy12g0191 201 PANTHER RING-H2 FINGER PROTEIN ATL67 18 199 IPR044289 GO:0016567|GO:0016740
Ahy12g0191 201 CDD RING-H2_PA-TM-RING 129 172 - -
Ahy12g0191 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 176 IPR013083 -
Ahy12g0191 201 Pfam Ring finger domain 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0191 Ahy-Chr12 3134162 3135089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0191 27 192 C3H Transcription Factor Family AT5G07040 38.690 2.51e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0191 - - adu:107472862 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0191 12 3134162 3135089 Ahy2g0219 2 2512750 2513931 hybridization
Ahy14g2546 14 132297023 132298298 Ahy12g0191 12 3134162 3135089 PCT
Ahy4g2236 4 118570987 118572234 Ahy12g0191 12 3134162 3135089 PCT