Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0179 ATGGACGACGATTGGGATCTCCACGCCGTTGTTAGAGGCTGCGCCACCATTTCCTCCACCACCTCCACTACTACCACCACCACCACCACCACTTCCTACCAACCTCCACCTTCTTCTTCATGTGGGTTCTTTAACGAACAACAAAGCAATGTTTTTTCAGTTTCCAGCAACCACCCTTTTGAATCACGAAGCTCCGTTCAGGAACTTCAGCATAATCATAATCTTTGCAAGCCTTTCTTCTTCAAATCACAGCCTTTTCAGTCTTTTCAATCCTCTTCTTCTTCGTCATCACCACCCAATTCAGCTCTGACACAACAGAAACATCAGCAACAGAATTGTAATAACGGTAAGAACCCTCACCATGCAGGTTCAGCTACCACCCCACGATCTAAAAGAAGGAAGAATCAGCTTAAGAACGTTTGTCAAGTTTCAGCTGAGAATCTCTCCTCAGACGTATGGGCATGGAGGAAATATGGACAGAAACCCATCAAAGGTTCACCATATCCAAGAGGATATTATAGATGTAGCAGCTCAAAAGGATGTTTGGCTAGAAAACAAGTTGAAAGGGACAGATCAGATCCAACAAAGTTCATAGTTACATTCACTGGTGTACACAACCACCCTGCTCCAACTCATAGAAACTCACTTGCTGGCTCTTCACGCCAAAAGCTACAAACACCTGAAATAGCCACTACAGGGGACACTGAAATGGTCCTCACAATGAAGCCGGCCTCGATTTCGGCTTCTCCTTCCACTTCAGGAGTGGAAGAAGAGGCTGAAACCGAGGCCACACCGGCGCAGAAGTCGGAGAGCGAAGAGGACAACATGGAGGATTATTTGATGAATGATGATGATGGTGGGATTGAGGAAACTGAGTTTGGTTCACCAGATATGGAGATAACTGATGATTTCTTTGAAGGATTGGATGAACTGACAGCAGCCACAGATGGAGACTCATGCTTTTCAACAAGTGTTCCTAATCCTTCCCTTCCTCCTTTTGTGGCCAATAGTGCTGCCACTGCTGCTGGTGGTAGCTGA 1038 0.4595 MDDDWDLHAVVRGCATISSTTSTTTTTTTTTSYQPPPSSSCGFFNEQQSNVFSVSSNHPFESRSSVQELQHNHNLCKPFFFKSQPFQSFQSSSSSSSPPNSALTQQKHQQQNCNNGKNPHHAGSATTPRSKRRKNQLKNVCQVSAENLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERDRSDPTKFIVTFTGVHNHPAPTHRNSLAGSSRQKLQTPEIATTGDTEMVLTMKPASISASPSTSGVEEEAETEATPAQKSESEEDNMEDYLMNDDDGGIEETEFGSPDMEITDDFFEGLDELTAATDGDSCFSTSVPNPSLPPFVANSAATAAGGS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0179 345 MobiDBLite consensus disorder prediction 276 299 - -
Ahy12g0179 345 MobiDBLite consensus disorder prediction 316 334 - -
Ahy12g0179 345 MobiDBLite consensus disorder prediction 21 40 - -
Ahy12g0179 345 MobiDBLite consensus disorder prediction 204 224 - -
Ahy12g0179 345 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 345 - -
Ahy12g0179 345 MobiDBLite consensus disorder prediction 207 224 - -
Ahy12g0179 345 MobiDBLite consensus disorder prediction 90 125 - -
Ahy12g0179 345 ProSiteProfiles WRKY domain profile. 144 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g0179 345 SUPERFAMILY WRKY DNA-binding domain 144 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy12g0179 345 MobiDBLite consensus disorder prediction 90 135 - -
Ahy12g0179 345 SMART WRKY_cls 149 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g0179 345 Pfam WRKY DNA -binding domain 151 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g0179 345 Gene3D WRKY domain 133 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy12g0179 345 MobiDBLite consensus disorder prediction 245 299 - -
Ahy12g0179 345 MobiDBLite consensus disorder prediction 316 345 - -
Ahy12g0179 345 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 345 IPR044810 GO:0003700
Ahy12g0179 345 MobiDBLite consensus disorder prediction 261 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0179 Ahy-Chr12 3043457 3045318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0179 1 344 WRKY Transcription Factor Family AT4G01250 44.928 5.36e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy12g0179 WRKY 1.00E-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0179 K13425 - gmx:100815829 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0179 12 3043457 3045318 Ahy2g0208 2 2432672 2434511 hybridization
Ahy14g2537 14 132203494 132206042 Ahy12g0179 12 3043457 3045318 PCT
Ahy4g2229 4 118493884 118496400 Ahy12g0179 12 3043457 3045318 PCT
Ahy12g0179 12 3043457 3045318 Ahy14g2537 14 132203494 132206042 PCT
Ahy12g0179 12 3043457 3045318 Ahy4g2229 4 118493884 118496400 PCT