Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0177 ATGGTGGACGAAGAAGGTGAATTCGCCGGCACAATTTGCTCCATTTGCTACGAAGATCTCAAACCAGTTTCCGAAGATCTTCAATCTATCTCCGTTTGCGGCCACGTCTTCCACGAGCTTTGCTTGCAGCAATGGTTCGAGTACTGTTCGAAAGCGAAGAAGCACACTTGCCCCGTTTGCAAGCAGAGTTGCAGGGTCGGCGATGCTTGCAGGCTTTACTTCCAATCGGTGGGCGATGTGGTCGAATCTGTTATGCATAGGAAACCATTTGATTCCGAAGAAGATTCCGGAGTTTTGAGAAAGGAAGTGAACAGGTTGGAGGTCAGGCTTTCGGGGCTTAGTTCAGAGTTGGAGAAGAAGGTGAAGGAAATTGAGCAGCTCACGAAGGAGCTTGGTGCTTGCAAGGAGAAAGCAAAGATTGAAATAGCATTAAAAAATGAGGCCTTGAGTCAAAAAGCATCCATGCAAACTGAGCTTCGTATGAAGTCAGAGGAGCTTGAGAAGTCAACTTTTGAGTGCTATTCATTACAAAAAAGAAATATCACTTTGGCTAAGGAAATTGCAGCATTTAAATTAGTCTCTGATATTGACCTTAATGAAGAGGAAGTTTTGAAGTATGCAACTTTGGGTAACGGGTTTAATGATAAAGATACGATAGACACATTGAGCAGATCTATGGTTCGGCGTAACAGGGATTACAAAGATCTAATAGCTAAACGCAATGAATTAGTGGCCAAGTGCAATCATCTAGAAAAGGGTGAGGCTCGGTACATTAAAAAGCTTGAGAAGGCTAAGGAGAAGATTCTTAAATTGAAGGCTAGGGTACAAGAACTAGAGACAGCTGCAGAAGTAAGAGAGAACCATTATCTGAAGTCTTTGAAAGCTTCAAAGATGAATAAGTGTTCAAATAATCTTGAAAACAACCTCAGTTCTAAGAATGATGTACCCACGACCAGCAATACTCCATTAAATGAACAAACGAAACAAACTTCACCCAAATCTGAAATGGACTTGAGTGTGAGCAACAGTAAATCTCTACAATTTTCAAGGATAGTCAACTGCATTGCTACCGAAAGTAAAGCTGTAAATGTTAGTAATGAAAATAAATCTACCCCTGCTCTTCAAAAAGAGAGGGATTTTATATCTCTTGATGCTGATGCTTCAGAATTTACTGAACCTTTGTCTGGAGGGTCAAGACGTGACTGCAATGATCGATACAGTGGTGCTGCTCTTAGCAAGCCTACTGTAGCCAAGTCAGATGCAGCATCCGAAAGGAAGAAAGAAACAACAGCTCAAGGAACATGTAACTTGGCTGATTCTTCAAGAATTGACATTGATGTTGAAATGGCGAAAAATGATGTCATTGATTTGGATGATGATATAACATTACTTGATAAACAAGTTCAACCCAAGGTTAATATTATAAAGGAGTCACCACCAATAATTGCAAATCCAGGGGACATTTGTTTTTCTGGCGGATTGCTTGGTCCTGATGGATCACATAGGTACTTGGGTAAATGGTGCAAGCGTAGAAAAAATGGCGAATCGCATTCAGTAAATGGAGGATTGATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAGTTAAAGTTCTAAGGACAGCAGGCCAAACCTTCATGGATGACAAGGAAAATGACAAGGAATCAAAAAGGTTAAAGGTTGGACCTAAAACAAGTAGTTTGCGACCCCAGGGATGTCTGCAGATAGATCACTTCTTTGGCAGGGTTAATCACTAA 1755 0.4125 MVDEEGEFAGTICSICYEDLKPVSEDLQSISVCGHVFHELCLQQWFEYCSKAKKHTCPVCKQSCRVGDACRLYFQSVGDVVESVMHRKPFDSEEDSGVLRKEVNRLEVRLSGLSSELEKKVKEIEQLTKELGACKEKAKIEIALKNEALSQKASMQTELRMKSEELEKSTFECYSLQKRNITLAKEIAAFKLVSDIDLNEEEVLKYATLGNGFNDKDTIDTLSRSMVRRNRDYKDLIAKRNELVAKCNHLEKGEARYIKKLEKAKEKILKLKARVQELETAAEVRENHYLKSLKASKMNKCSNNLENNLSSKNDVPTTSNTPLNEQTKQTSPKSEMDLSVSNSKSLQFSRIVNCIATESKAVNVSNENKSTPALQKERDFISLDADASEFTEPLSGGSRRDCNDRYSGAALSKPTVAKSDAASERKKETTAQGTCNLADSSRIDIDVEMAKNDVIDLDDDITLLDKQVQPKVNIIKESPPIIANPGDICFSGGLLGPDGSHRYLGKWCKRRKNGESHSVNGGLIAVGADGRGGRVKVLRTAGQTFMDDKENDKESKRLKVGPKTSSLRPQGCLQIDHFFGRVNH* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0177 584 Pfam Ring finger domain 12 61 IPR001841 -
Ahy12g0177 584 SUPERFAMILY RING/U-box 10 65 - -
Ahy12g0177 584 SMART ring_2 13 60 IPR001841 -
Ahy12g0177 584 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 582 - -
Ahy12g0177 584 MobiDBLite consensus disorder prediction 390 433 - -
Ahy12g0177 584 ProSiteProfiles Zinc finger RING-type profile. 13 61 IPR001841 -
Ahy12g0177 584 Coils Coil 103 137 - -
Ahy12g0177 584 MobiDBLite consensus disorder prediction 302 340 - -
Ahy12g0177 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 64 IPR013083 -
Ahy12g0177 584 CDD RING-H2 13 61 - -
Ahy12g0177 584 Coils Coil 254 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0177 Ahy-Chr12 3015832 3019611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0177 491 584 C3H Transcription Factor Family AT4G01270 40.594 3.53e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0177 K11985 - gmx:100812811 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0177 12 3015832 3019611 Ahy2g0207 2 2413303 2417294 hybridization