Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0079 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTTCACGGAACGCCGGTGTATTACTATTGTTCGCCAGCTTTGGAAGAGCGCGAGTCTCTAACCTCTAACGACGGTAATGGGACAGCTGCTTCACTCACCACCGGACTGCTCATCGGCTTGAACTTGGAATCATCCATACCAGATACTTACCAGTCGCCTCCTGCGCCTCTACCGTATGATACTGTCCTGAGAGGTCCTGCATCAACAGATTCCGAGTCAGGTAGAGAAACCATTAGTGGTAGTAGTTTCGAAATTTTAGTTACATGTGAAGATCTTGAAGAATCAGATTGTAAAGCTCAACCTAAATCGGCACCCTTGTCTCCAAGGAAGCCGGAACCTTTAAAATCAAATGAATCTCATGCATTGGTGACAGAAGAAGAGGATGTATGTCCAATTTGTCTAGAAGATGATGCTGAGAATCCCAAAACACTGACGAAATGCGACCACCACTTTCACCTGTCATGCATTCTCGAGTGGATGGAAAGAAGCGACTCGTGTCCCATATGTGATCAGGAGATGATCTTTGACCAGCCACTGGATTAG 579 0.4629 MGGCCCSARKPHLHGTPVYYYCSPALEERESLTSNDGNGTAASLTTGLLIGLNLESSIPDTYQSPPAPLPYDTVLRGPASTDSESGRETISGSSFEILVTCEDLEESDCKAQPKSAPLSPRKPEPLKSNESHALVTEEEDVCPICLEDDAENPKTLTKCDHHFHLSCILEWMERSDSCPICDQEMIFDQPLD* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0079 192 ProSiteProfiles Zinc finger RING-type profile. 142 182 IPR001841 -
Ahy12g0079 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 191 - -
Ahy12g0079 192 MobiDBLite consensus disorder prediction 108 133 - -
Ahy12g0079 192 Pfam Ring finger domain 141 181 IPR001841 -
Ahy12g0079 192 SMART ring_2 142 181 IPR001841 -
Ahy12g0079 192 MobiDBLite consensus disorder prediction 61 89 - -
Ahy12g0079 192 SUPERFAMILY RING/U-box 133 188 - -
Ahy12g0079 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 189 IPR013083 -
Ahy12g0079 192 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0079 Ahy-Chr12 1822412 1825270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0079 1 192 C3H Transcription Factor Family AT4G00335 58.549 7.38e-73 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0079 - - adu:107472508 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0079 12 1822412 1825270 Ahy2g0042 2 462120 464767 hybridization
Ahy14g2483 14 130181714 130185802 Ahy12g0079 12 1822412 1825270 PCT
Ahy4g2195 4 117423915 117427942 Ahy12g0079 12 1822412 1825270 PCT
Ahy12g0079 12 1822412 1825270 Ahy14g2483 14 130181714 130185802 PCT
Ahy12g0079 12 1822412 1825270 Ahy4g2195 4 117423915 117427942 PCT