Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0038 ATGGATCGTGGGGACCAAATGGCGTTGTCTGGTTCTGCATCTTATTATATGCAGAGAGGAATGCCTGGTTCTGGAACACAGCAACCTGACTTGCACAATTCGCCTAGTATGCGTCCATTGTCGAATCCTAACCTCCCATTTCAGCAAACCATTGGGGGTAGTACCATTGGATCCACGATGCCATTGGAATCTTCGGGGATGTCGTCTCAATGTGTCAATGTTGGTGCCCCTGCTGGAGCTCCTTCCGGAGAACCGGTCAAAAGGAAGAGGGGTAGGCCTAGGAAGTATGGGCCGGATGGAACCGTTTCACTGGCATTGACTCCAACGCCAGCTACTCATCCAGGAACCATGACACAACAAGGCCAGAAACGGGGTAGAGGTCGCCCCCCAGGGTCTGGGAAGAAACAGCAGCTGGCTTCTCTTGGTGAATTGATGTCTGGTACGGCTGGGATGGGTTTCACTCCTCATATCATCACCGTTGCTGTTGGAGAAGACATCGCAACCAAAGTTATGGCGTTTTCTCAGCAAGGGCCTAGAGCAATTTGTATTATGGCAGCCACTGGTGCTGTCTCTACCGTGACACTTCGACAACCTTCAACTTCCGGCGGCACTGTAACATATGAGGGCCGTTTTGAGATATTGTGCCTATCAGGCTCTTACTTACTTACCGATAGTGGTGGATCTCGCAATCGATCTGGGGGACTAAGTGTTTCCCTTGCTAGTCCCGATGGCCGTGTTATCGGCGGAGGAGTTGGCGGAGTACTTGTTGCAGCATCTACAGTTCAGGTTGTAGTTGGGAGCTTTATTTGGGGCGGATCGAAGGCGAAGAAACAGAAAAAAGAAGGTTCTTCCGAAGGAGCAGAAGTTGCTATGGAGCCGGATCATCAGACGGTTCATAACATTTCCCCGAATCAAAATCTTACTCCAACCTCGTCTCTAAGTCCGTGGCCTAGTTCGCGTCCAATGGATATGCGCCATTCGCATATTGACATCGATTTAATGCGCGGGTGA 1011 0.5064 MDRGDQMALSGSASYYMQRGMPGSGTQQPDLHNSPSMRPLSNPNLPFQQTIGGSTIGSTMPLESSGMSSQCVNVGAPAGAPSGEPVKRKRGRPRKYGPDGTVSLALTPTPATHPGTMTQQGQKRGRGRPPGSGKKQQLASLGELMSGTAGMGFTPHIITVAVGEDIATKVMAFSQQGPRAICIMAATGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTDSGGSRNRSGGLSVSLASPDGRVIGGGVGGVLVAASTVQVVVGSFIWGGSKAKKQKKEGSSEGAEVAMEPDHQTVHNISPNQNLTPTSSLSPWPSSRPMDMRHSHIDIDLMRG* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0038 336 MobiDBLite consensus disorder prediction 74 138 - -
Ahy12g0038 336 MobiDBLite consensus disorder prediction 275 324 - -
Ahy12g0038 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 330 IPR039605 GO:0003680
Ahy12g0038 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 272 - -
Ahy12g0038 336 MobiDBLite consensus disorder prediction 297 318 - -
Ahy12g0038 336 MobiDBLite consensus disorder prediction 1 48 - -
Ahy12g0038 336 CDD DUF296 154 268 IPR005175 -
Ahy12g0038 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Ahy12g0038 336 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Ahy12g0038 336 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Ahy12g0038 336 MobiDBLite consensus disorder prediction 105 125 - -
Ahy12g0038 336 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
Ahy12g0038 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 330 - -
Ahy12g0038 336 MobiDBLite consensus disorder prediction 11 48 - -
Ahy12g0038 336 Gene3D - 155 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0038 Ahy-Chr12 1403639 1408503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0038 1 336 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.811 1.70e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0038 - - gmx:100799791 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0038 12 1403639 1408503 Ahy12g0038 12 1403639 1408503 ECH
Ahy12g0038 12 1403639 1408503 Ahy2g0002 2 20436 25041 hybridization
Ahy14g2409 14 127518185 127522650 Ahy12g0038 12 1403639 1408503 PCT
Ahy4g2137 4 115650212 115654469 Ahy12g0038 12 1403639 1408503 PCT
Ahy12g0038 12 1403639 1408503 Ahy14g2409 14 127518185 127522650 PCT
Ahy12g0038 12 1403639 1408503 Ahy4g2137 4 115650212 115654469 PCT