Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0033 ATGAACAACAACAACAACTACTACAACAGAGCGAGGTACCCACCACCTGGGATCGGTGGCGGTGGTCTTGGACGAGGAGGAGGAGGAGGAGGCCCTGGTTTCAATCAAAACTCACCGTTTCAGCCAAGGCCTAATTACCAGCAACACCAGCAACAGCACCAACAACTACAACAGCAGCATCAGCAATATGTTCAGAGGCAGATGGTGCAGCAACAACAACAACAGCAGCAGCAGCAACAACAACAGCAATGGCTGAGAAGGGCGCAGATGGGTGCTGCTGACTCCAACGTCGTGGATGAGGTTGAGAAGACCGTGCAGTCTGAAGCCATTGACCCGAGTTCTCAAGATTGGAAGGCAAGGCTAAAGGTTCCACCACCTGATACGCGTTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTATTTTTTGAAGCGAGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCAAGGGCTAAAAATGGGACAGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGGATAACAATGTTATTCAAGTTGTTATATTGGTTCCAACAAGGGAGTTAGCTTTGCAAACATCTCAAGTATGCAAAGAACTTGGAAAGCACTTGAAAATTCAAGTGATGGTTACAACTGGTGGTACTAGCCTGAAAGATGATATCATGCGCTTATATCAACCAGTTCATTTACTAGTTGGGACTCCTGGAAGGATATTAGATCTCGCTAAGAAGGGTGTTTGCGTTCTGAAAGATTGCGCAATGCTTGTTATGGATGAGGCCGATAAGCTTTTGTCCCCAGAATTCCAGCCTTCTATACAGCAGCTGATTCATTTTCTTCCTTCACACCGACAAATTCTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCAAAAGCCATATGTCATTAACCTTATGGATGAGCTAACTTTGAAGGGTATCACACAGTATTATGCATTTGTCGAAGAGAGACAGAAGGTTCACTGCCTGAATACACTGTTTTCTAAGTTGCAAATAAACCAGTCAATCATCTTTTGCAATTCGGTGAATCGTGTTGAACTCCTTGCAAAAAAAATCACCGAGCTTGGATATTCGTGTTTCTATATTCACGCAAAGATGTTGCAAGATCATCGTAATAGAGTGTTTCATGACTTCCGCAATGGCGCATGCCGTAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATTCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTCCACAGGGTCGGTCGCTCAGGGAGGTTTGGGCATCTTGGTTTAGCAGTTAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAAATTCCACCACATATTGACCAGGCAATTTATTGCCGGTGA 1548 0.4225 MNNNNNYYNRARYPPPGIGGGGLGRGGGGGGPGFNQNSPFQPRPNYQQHQQQHQQLQQQHQQYVQRQMVQQQQQQQQQQQQQQWLRRAQMGAADSNVVDEVEKTVQSEAIDPSSQDWKARLKVPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSPEFQPSIQQLIHFLPSHRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0033 515 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 10 515 - -
Ahy12g0033 515 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 10 515 - -
Ahy12g0033 515 SMART helicmild6 392 473 IPR001650 -
Ahy12g0033 515 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 512 IPR001650 -
Ahy12g0033 515 CDD SF2_C_DEAD 353 482 - -
Ahy12g0033 515 CDD DEADc_DDX6 143 343 - -
Ahy12g0033 515 Pfam Helicase conserved C-terminal domain 367 473 IPR001650 -
Ahy12g0033 515 MobiDBLite consensus disorder prediction 34 59 - -
Ahy12g0033 515 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 288 296 IPR000629 -
Ahy12g0033 515 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Ahy12g0033 515 Pfam DEAD/DEAH box helicase 166 330 IPR011545 GO:0003676|GO:0005524
Ahy12g0033 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 495 IPR027417 -
Ahy12g0033 515 Gene3D - 346 515 IPR027417 -
Ahy12g0033 515 Gene3D - 111 345 IPR027417 -
Ahy12g0033 515 MobiDBLite consensus disorder prediction 1 59 - -
Ahy12g0033 515 Coils Coil 46 66 - -
Ahy12g0033 515 SMART ultradead3 160 356 IPR014001 -
Ahy12g0033 515 MobiDBLite consensus disorder prediction 95 132 - -
Ahy12g0033 515 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 342 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0033 Ahy-Chr12 1344975 1350492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0033 141 512 Eukaryotic Initiation Factors Gene Family AT3G19760 37.968 2.76e-93 288