Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g3142 ATGGTTTGGTTTCAATGCGAGGACTGCGGCGACAACCTCAAGAAGCCCAAGTTGGCTGGTCACTTCCGAAGCTGCTCCGCTTACAGGTTATCATGCATTGACTGTGGTGAAACTTTTGGCCAAGACACCGTTCAGAACCACACTCAGTGTATGACCGAAGCGGAAAAGTATGGTCCAAAGGGGCAAGTCAAGAATGGTGCACCTGCAAAGCCTAACAAGGATGGCAACAAGCAAAAGCCTGATGTTGATATCAATGTCGGTTTGTCCGAACGCCCTCCATGGTTTTGTAGTCTTTGCAATACACAAGCTACCAGCAAGCAAACACTTCTTCTCCATGCCGATGGGAAGAAACATCGGGCAAAAGCCCGAGCATACCATGCTTCTAAGCAACCACCGCCCCAGACAGACAAATCTGCACCTGATGCTAAGATTGTGTCGGAGGCTGCTCCTAATGAGGCTACAGACGGCAAAAATGCAGAGCAGCCAAAATTAGAAGAGTCTTCTAAACAAGATAATTTGAAATCAGGGGACAAAATTTCTTCAGCAAAAAAGAGGAAACTTGAAGCGTCGGAGGGTGATCTTATTAAAAAATGCAGGAATGACATTTCTGTTGACACTGGAAATGGAGAAGTTATTCAGGGTGAAGAAGCAGAAGGGAAAGTAGAATCTGCTGTCAAAAATAAAATTAAGTGGAAGAAGTTTATCAAATCAGCTCTGAAATCTCAACCTGATGGAACTTTGAAGATGAAGAAACTGAAAAAAGTTGTCCTTAAGGCACTGCAGGAATCTGGCGTCGTAGTGGATGAAACTGAGTTCAGTGAGGCACTTCAGCAGAAAATAAACTCCAGCTCTAGATTTGCTGTTGAGGGCAAGTATGTGCAATTGGTGGCCAAAGACTGA 900 0.4467 MVWFQCEDCGDNLKKPKLAGHFRSCSAYRLSCIDCGETFGQDTVQNHTQCMTEAEKYGPKGQVKNGAPAKPNKDGNKQKPDVDINVGLSERPPWFCSLCNTQATSKQTLLLHADGKKHRAKARAYHASKQPPPQTDKSAPDAKIVSEAAPNEATDGKNAEQPKLEESSKQDNLKSGDKISSAKKRKLEASEGDLIKKCRNDISVDTGNGEVIQGEEAEGKVESAVKNKIKWKKFIKSALKSQPDGTLKMKKLKKVVLKALQESGVVVDETEFSEALQQKINSSSRFAVEGKYVQLVAKD* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g3142 299 Gene3D - 1 50 - -
Ahy11g3142 299 SUPERFAMILY beta-beta-alpha zinc fingers 83 127 IPR036236 -
Ahy11g3142 299 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Ahy11g3142 299 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 296 IPR039999 GO:0003677
Ahy11g3142 299 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Ahy11g3142 299 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Ahy11g3142 299 MobiDBLite consensus disorder prediction 114 186 - -
Ahy11g3142 299 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Ahy11g3142 299 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Ahy11g3142 299 MobiDBLite consensus disorder prediction 158 186 - -
Ahy11g3142 299 Pfam Zinc-finger of C2H2 type 94 118 - -
Ahy11g3142 299 MobiDBLite consensus disorder prediction 58 86 - -
Ahy11g3142 299 Gene3D Classic Zinc Finger 88 130 - -
Ahy11g3142 299 SMART ZnF_U1_5 91 125 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g3142 Ahy-Chr11 149048762 149051091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g3142 73 219 C2H2 Transcription Factor Family AT2G19380 41.611 1.27e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g3142 K15263 - gmx:100790703 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3142 11 149048762 149051091 Ahy11g3142 11 149048762 149051091 ECH
Ahy11g3142 11 149048762 149051091 Ahy1g1811 1 94364307 94366556 hybridization