Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g3123 ATGGCCTATTTAGAGCTTCAACAATTGGATCTTCTAAGACTTGCATCCGCAGTTATCCAAACACAATTCTATCTGGAAGCAAGGATTGAGAGAGCTATTTTCATGGGGTGCAGCAAAGGGGAAATTGAGCTTGGTTTCTCCACTATCCCTCAAATTGACATGAAAGCAGCAGTGAAGAGTTTATTCCCAGAAGATTTTTCAAGACAGCAGATTCATCATCCAGCTTCATCGTCTTCAAGCTCTTGCCCTAGCCATGAATTCTCATCCTTACGAGGAGTATTGTTACCCGCACCAGAGGGTGAGCAAGAAGCAATCATAAGAGCAATCCTTCATGTTATTTCTTCTTCTTCTTCACCCGCCACCGCTACTTCTCAACCACCACCATATAATAATAGTGCTTTCAGGGCATATTCTTCAACTGCTTACAATTTAGTAACAAGTAGCAGCAGCAGCAGGTTTAGTTTAATGAAGAGATCTATAGAATTCTCTAGAACCCTACATTTAATGAGAATTAGAGACCGCTTTCATTTCCAACATCAACACCAACTGCCTCATCATCCCCTCATCATTGATACCCAGAATGCTAATAATAATAAGCATCTTCGTCACATCATATTAGAGAGAAGAAGACGCGAGAACGAAAACAAGTGTTTCCGGGAACTTAGGGCATTACTTCCTCCAGGAACGAAGAAACACAAATCTTCGGTTCTTACAGCGGCAAAGGAGGCATTGAAGTCTTTAATTGCTGAAATTGAAAAGCTTAACATAAGAAACCAGCAGTTAAAAACACTACTTGGTTCATCATCATCAAGCTATGTTAATGTTCATAGCTCCTCATCATCATCATCATCAAATGAGAGATTGAACGTTGCGGTGTCACATGTAGCGGGGTCGAGTTCATCGGAAGAGAGAATGGTGGATTTGCAAGTTGCTGTCAGAGGAGAAAGCTTGTCTCATCATCGTCAATCTGATATTATGATTCGCATATTGGAATTCTTGAAAAACCTTCAGAACCTCAGCTTCGTTTCCATGGCCACAAACACTAGTACTAATACACAAGGCACAACCATCAACCAAATCATCTTCAGATTAAGGATTCTTCAGGGAAGTGAATGGGACGAGTCTGGCTTCGTGGAAGCAGTGAGAAGAATTGTGTCTAACTTAATACGTAATTGA 1176 0.409 MAYLELQQLDLLRLASAVIQTQFYLEARIERAIFMGCSKGEIELGFSTIPQIDMKAAVKSLFPEDFSRQQIHHPASSSSSSCPSHEFSSLRGVLLPAPEGEQEAIIRAILHVISSSSSPATATSQPPPYNNSAFRAYSSTAYNLVTSSSSSRFSLMKRSIEFSRTLHLMRIRDRFHFQHQHQLPHHPLIIDTQNANNNKHLRHIILERRRRENENKCFRELRALLPPGTKKHKSSVLTAAKEALKSLIAEIEKLNIRNQQLKTLLGSSSSSYVNVHSSSSSSSSNERLNVAVSHVAGSSSSEERMVDLQVAVRGESLSHHRQSDIMIRILEFLKNLQNLSFVSMATNTSTNTQGTTINQIIFRLRILQGSEWDESGFVEAVRRIVSNLIRN* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g3123 391 CDD bHLH_AtbHLH_like 203 254 IPR045239 -
Ahy11g3123 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Ahy11g3123 391 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 2 388 IPR044658 -
Ahy11g3123 391 Coils Coil 237 264 - -
Ahy11g3123 391 Gene3D - 195 270 IPR036638 GO:0046983
Ahy11g3123 391 Pfam Helix-loop-helix DNA-binding domain 201 247 IPR011598 GO:0046983
Ahy11g3123 391 SMART finulus 204 253 IPR011598 GO:0046983
Ahy11g3123 391 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 2 388 - -
Ahy11g3123 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 263 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g3123 Ahy-Chr11 148891367 148894521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g3123 1 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 34.382 1.73e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy11g3123 HLH 7.20E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g3123 - - ahf:112776694 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3123 11 148891367 148894521 Ahy11g3123 11 148891367 148894521 ECH
Ahy11g3123 11 148891367 148894521 Ahy1g1838 1 94847082 94850701 hybridization
Ahy11g3123 11 148891367 148894521 Ahy3g1887 3 41876544 41884656 PCT
Ahy3g1887 3 41876544 41884656 Ahy11g3123 11 148891367 148894521 PCT