Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g3106 ATGATACCTTCTTCTTCTTCTTCTATCATGATGCCTACTACTACCACTACTCTTCTTGATCTCAATCAAGATCTAACTCTAAGCCATGATGATGATGACCAAGAACACCAGCACCCCTTCGCTACTACTCACCATCAACAACAACAACAACAACAACAACCCTCTTCTCTTTCATTTCCAATCCTCCTCAACCCCCTACCTCATCAAAAGGTTGATGAGAAGATTGATGATGCTAATTGTAGTAGTGGATCACGGGATCATTCAGAAAAACCTAATCACGGCAGCGGAATCATCAAGCTGATTTGGAAGAATAAGAAACAAGAGGAAGCAGAAGAAGAAGAAGAAGAAGTGATCCCAAAGTGGATGCCTTCCAAGATGAGGATGATGCGGAAGATGATGATATCCGATCATCATCAACAACAACAACAGGAACAAGAGATTCCTATTATTGGAACTGACGATGACAACAACAACAGTACCACTGCTCCTACTGTTAGGGTTTGCTCTGATTGTCACACCACTAAGACTCCTCTCTGGAGAAGTGGACCAAGAGGCCCCAAGTCACTTTGCAATGCCTGCGGTATCCGACAAAGAAAGGCGAGGCGTGCCGCCATGGCTGCTGCGGCAGCAAATGGAACCACACTGGCGGCGGCTGAGGTAAACAAGTTTGGTAGAAGCAAAGAGAAGCAGCTCAAGTCCAAAACTTGCAGTAGTGAGTTGATGAAAAAGAAGCGCAATAAGCTTGCAGCTGCTGCGAGAGGGAAGCAATCTCATCATCATCATCATAATGATTATTGTTTCGAGGATTTGAGATTAAGATTATTAAGCAAGAATTTGGCTGTTCATCAAGTATTCCCTCAGGACGAGAAAGAAGCTGCGATCCTTCTCATGGCTTTATCCTATGGTCTTCTTCTTGGATGA 921 0.4397 MIPSSSSSIMMPTTTTTLLDLNQDLTLSHDDDDQEHQHPFATTHHQQQQQQQQPSSLSFPILLNPLPHQKVDEKIDDANCSSGSRDHSEKPNHGSGIIKLIWKNKKQEEAEEEEEEVIPKWMPSKMRMMRKMMISDHHQQQQQEQEIPIIGTDDDNNNSTTAPTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAANGTTLAAAEVNKFGRSKEKQLKSKTCSSELMKKKRNKLAAAARGKQSHHHHHNDYCFEDLRLRLLSKNLAVHQVFPQDEKEAAILLMALSYGLLLG* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g3106 306 MobiDBLite consensus disorder prediction 76 97 - -
Ahy11g3106 306 Pfam GATA zinc finger 168 201 IPR000679 GO:0006355|GO:0043565
Ahy11g3106 306 Gene3D - 164 261 IPR013088 GO:0006355|GO:0008270
Ahy11g3106 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 202 - -
Ahy11g3106 306 MobiDBLite consensus disorder prediction 28 62 - -
Ahy11g3106 306 ProSitePatterns GATA-type zinc finger domain. 168 193 IPR000679 GO:0006355|GO:0043565
Ahy11g3106 306 ProSiteProfiles GATA-type zinc finger domain profile. 166 198 IPR000679 GO:0006355|GO:0043565
Ahy11g3106 306 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 27 304 - -
Ahy11g3106 306 CDD ZnF_GATA 167 199 IPR000679 GO:0006355|GO:0043565
Ahy11g3106 306 MobiDBLite consensus disorder prediction 76 93 - -
Ahy11g3106 306 SMART GATA_3 162 214 IPR000679 GO:0006355|GO:0043565
Ahy11g3106 306 MobiDBLite consensus disorder prediction 41 62 - -
Ahy11g3106 306 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 27 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g3106 Ahy-Chr11 148682940 148684662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g3106 155 302 C2C2-Gata Transcription Factor Family AT5G49300 34.459 2.25e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy11g3106 GATA 3.30E-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g3106 - - aip:107642994 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3106 11 148682940 148684662 Ahy11g3106 11 148682940 148684662 ECH
Ahy11g3106 11 148682940 148684662 Ahy1g1863 1 95212695 95214082 hybridization
Ahy11g3106 11 148682940 148684662 Ahy13g2179 13 41897769 41900288 PCT
Ahy11g3106 11 148682940 148684662 Ahy3g1869 3 39899999 39903181 PCT
Ahy13g2179 13 41897769 41900288 Ahy11g3106 11 148682940 148684662 PCT
Ahy3g1869 3 39899999 39903181 Ahy11g3106 11 148682940 148684662 PCT