Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g3098 ATGATGTTATCATCTACTAATAATAATAGGGTGATGAAGATGGAAGATGAAGAAGAAGAAGGAGAAGAATGCATGACTGGGCTTTCTCTTGCTCTGGCGGGAACAGTAGTGCCAAACAATAAGAAGAACAAGCCTCTTATGGTTTCCCTTCATCAGAAAAAATTCTGTTCTACTCATCAGAGAATCGACGATGATGGAGGACACCACCACCACCATCACAACAACAAGAAACTCAGGCTTACAAAGGAGCAATCAACCATGCTTGAAAACAGCTTCAACCAGCATACCACTCTTAATTCAGCGCAGAAAAAATCACTTGCTGAAGAATTGAATCTAAAGACAAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCTAGGACGAAGCTGAAACAGACGGAGGTGGATTGTGAGTTGTTGAAGAAACGGTGCCAAAGTCTAACAGATGAGAACCGAAGGTTGAAGAAGGAGTTGGAGGAAGTAACTGCTGCACTCAAAGCTACAACAACAACAACATCGCCACCATCATTATACATTCAACACTCCAAAGCTTCACCAGCTACCACTCTCACTATGTGTTCTTCATGCCACAAACTGCTCCTTCCAAATTCAAATTAA 618 0.4142 MMLSSTNNNRVMKMEDEEEEGEECMTGLSLALAGTVVPNNKKNKPLMVSLHQKKFCSTHQRIDDDGGHHHHHHNNKKLRLTKEQSTMLENSFNQHTTLNSAQKKSLAEELNLKTRQIEVWFQNRRARTKLKQTEVDCELLKKRCQSLTDENRRLKKELEEVTAALKATTTTTSPPSLYIQHSKASPATTLTMCSSCHKLLLPNSN* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g3098 205 SMART HOX_1 73 135 IPR001356 GO:0003677
Ahy11g3098 205 CDD homeodomain 76 132 IPR001356 GO:0003677
Ahy11g3098 205 SMART halz 131 175 IPR003106 GO:0006355|GO:0043565
Ahy11g3098 205 Coils Coil 123 171 - -
Ahy11g3098 205 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Ahy11g3098 205 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Ahy11g3098 205 Gene3D - 67 137 - -
Ahy11g3098 205 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Ahy11g3098 205 SUPERFAMILY Homeodomain-like 59 132 IPR009057 -
Ahy11g3098 205 Pfam Homeobox associated leucine zipper 131 165 IPR003106 GO:0006355|GO:0043565
Ahy11g3098 205 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 44 198 - -
Ahy11g3098 205 PANTHER - 44 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g3098 Ahy-Chr11 148613226 148614846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g3098 63 198 Homeobox Transcription Factor Family AT3G60390 58.824 5.47e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy11g3098 Homeodomain 1.30E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g3098 K09338 - lang:109339930 158.303