Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g3043 ATGTATGCCAGCCAGTTTGACGGCAACGCCGCCTTCTCCGGCGGCGGTTTCATGCCCTCTCAGACCACTCAGTCCCATGACTCTTCCTCCACCTTCACTACTTCCAGAAATCGTGATGCTCAGTCGTTGCTACCTTTGACGGTGAAGCAGATAAACGATGCGTATAACTCGAGCGATAATAAATCCAATTTGATTGTCGATGGTGTTGATGTCAACACTGTTACACTCGTAGGAAGGGTATGCAACAAAAATGGGATGATTACTGAAGTTCATTTTGTCCTTGATGATGGCACTGGAAGGATTGAGTGTAATAAATGGCTTCAAGAAGCAGCGGAATCAAATGAAGTGGACGGTATCATGGATGGAGTGTATGTGCGTCTTCATGGACAATTAAAAGGCCTTAATGGGAAAAGGATTTTGAATGTTTTCTCATTTAGACCTGTGACTGACTTTAATGAGATTGCCAGCCATTTCATTGAATGTATATATGTCCATCTCTACAATTCCAAGCTAAAGGCTGCTGTGCCTAACCAGCAACATGTTACAAATTCAACACCAATAACACCCACAAAAGGTTACCAAGTTCTCCCACCAAATCAATTCTCTGGTCTGCATAACAATGGTCAGCCGAGGTTCGAAGAAATGGTCCTGGATTTTTTGCATCTTCCCCCACACAGTGCATCGGAAGGGGGAGTCTCTATTAAACTTATTGAAGAGCAACTTCGACTTCCTAAGGACAAGCTGATGTTGGCTATCAAAAATCTTATTGATGAAGGCCAGATTTATGAAGCTATAAGTGATCACTATAAGTCAACCATCAATGGTTGA 828 0.4275 MYASQFDGNAAFSGGGFMPSQTTQSHDSSSTFTTSRNRDAQSLLPLTVKQINDAYNSSDNKSNLIVDGVDVNTVTLVGRVCNKNGMITEVHFVLDDGTGRIECNKWLQEAAESNEVDGIMDGVYVRLHGQLKGLNGKRILNVFSFRPVTDFNEIASHFIECIYVHLYNSKLKAAVPNQQHVTNSTPITPTKGYQVLPPNQFSGLHNNGQPRFEEMVLDFLHLPPHSASEGGVSIKLIEEQLRLPKDKLMLAIKNLIDEGQIYEAISDHYKSTING* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g3043 275 CDD RPA2_DBD_D 73 166 - -
Ahy11g3043 275 Gene3D - 35 170 IPR012340 -
Ahy11g3043 275 Gene3D - 204 273 IPR036388 -
Ahy11g3043 275 SUPERFAMILY "Winged helix" DNA-binding domain 208 272 IPR036390 -
Ahy11g3043 275 MobiDBLite consensus disorder prediction 14 36 - -
Ahy11g3043 275 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 2 272 - -
Ahy11g3043 275 SUPERFAMILY Nucleic acid-binding proteins 43 169 IPR012340 -
Ahy11g3043 275 PIRSF RPA32 1 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy11g3043 275 Pfam Replication protein A C terminal 165 267 IPR014892 -
Ahy11g3043 275 MobiDBLite consensus disorder prediction 15 36 - -
Ahy11g3043 275 PANTHER REPLICATION PROTEIN A-RELATED 2 272 IPR040260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g3043 Ahy-Chr11 148017816 148021363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g3043 1 225 Core DNA Replication Machinery Family AT3G02920 49.785 6.26e-76 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g3043 K10739 - gmx:100782819 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3043 11 148017816 148021363 Ahy11g3043 11 148017816 148021363 ECH
Ahy11g3043 11 148017816 148021363 Ahy1g1932 1 96053995 96057621 hybridization