Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g3001 ATGGGCCTTAAGGGGTTGAGGAGCGGCTGGACCGTGCCGCCCAAGCCATGCGACTCCTGCAAGATCGCTTCCGCCGCACTCTTCTGCCGCCCTGATTCCGCCTTCCTCTGCATAGCCTGCGATTCCAAGATTCACTGCGCCAACAAGCTTGCTTCGCGCCACGACCGAGTCTGGATGTGTGAGGTCTGCGAGCAGGCACCTGCTGCGGTCACCTGCAAAGCTGACGCAGCAGCCCTCTGCGTTACCTGCGACTCTGACATCCACTCTGCTAACCCCCTCGCCCGCCGCCACGAGCGCATTCCCGTCGAGCCCTTCTTTGACTCTGCCGACTCTATCGTCAAGGCCTCTGCCGCCTCCTTCAGCTTCGTCGTCCCAACCGACAACGGCATCTCCTCTGACGGATTCCCCAACGACGACGCCGCCTGGCTCATTCCCAACCCAAACTACGGCTCAAAGCTTATGGACGCCCCGGACATGAAATCAAGGGAGATGTTCTTCTCAGAAATGGATCCCTTCCTCGATTTCGATTATTCCAACTCCTTCAAGAACAACAACAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCGGTTCAATCCAAACCCGCTCCCATGATGAATCACCATGCCGAAGGTAGCTGCTTCGACATCGATTTTTGTAGATCGAAGCTTTCCTCCTTCAACTATCCATCACAGTCTATTAGCCAAAGCGTTTCTTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGACGGGAACACCGTCTCGGATATATCGTACTCGTTCGGCCGGAACTGCTCCGATTCGAGTGGGATGGGATCGGCGGGAAGTGGCGGCGGAGCCACGCAGCTGTGCGGGATGGACCGTGAGGCGAGGGTGCTGAGGTACAGGGAGAAGAGGAAGAACCGTAAGTTCGAGAAGACCATAAGATACGCTTCGCGTAAGGCTTATGCAGAAACCCGGCCCAGGATCAAGGGCCGGTTCGCTAAACGGACCGAAATCGAGTCGGAGGTGGATCGTCTCTACAGCCCCGGCGGTGGTGTCCCAGGGTGTCTCATGCTGGACAGCCAATACGGCGTCGTACCATCGTTTTAG 1092 0.5723 MGLKGLRSGWTVPPKPCDSCKIASAALFCRPDSAFLCIACDSKIHCANKLASRHDRVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERIPVEPFFDSADSIVKASAASFSFVVPTDNGISSDGFPNDDAAWLIPNPNYGSKLMDAPDMKSREMFFSEMDPFLDFDYSNSFKNNNNNNSAGNDSVVPVQSKPAPMMNHHAEGSCFDIDFCRSKLSSFNYPSQSISQSVSSSSLDVGVVPDGNTVSDISYSFGRNCSDSSGMGSAGSGGGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESEVDRLYSPGGGVPGCLMLDSQYGVVPSF* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g3001 363 CDD Bbox1_BBX-like 16 59 - -
Ahy11g3001 363 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 4 363 - -
Ahy11g3001 363 Pfam CCT motif 288 330 IPR010402 GO:0005515
Ahy11g3001 363 SMART bboxneu5 12 59 IPR000315 GO:0008270
Ahy11g3001 363 SMART bboxneu5 60 102 IPR000315 GO:0008270
Ahy11g3001 363 Pfam B-box zinc finger 57 102 IPR000315 GO:0008270
Ahy11g3001 363 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 363 IPR045281 GO:0009909
Ahy11g3001 363 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Ahy11g3001 363 ProSiteProfiles CCT domain profile. 288 330 IPR010402 GO:0005515
Ahy11g3001 363 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Ahy11g3001 363 CDD Bbox1_BBX-like 60 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g3001 Ahy-Chr11 147638412 147640588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g3001 3 363 C2C2-CO-like Transcription Factor Family AT5G57660 54.400 8.24e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ahy11g3001 zf-B_box 1.00E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g3001 - - gmx:100805693 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3001 11 147638412 147640588 Ahy11g3001 11 147638412 147640588 ECH
Ahy11g3001 11 147638412 147640588 Ahy1g1976 1 96566818 96568639 hybridization