Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2996 ATGGCTAATAACAAGAGCTTGTCATACCTTGTGGCATGGCTTGTCATAATGTTTTTGGTTGCGCCAAGTACAGCATCCATGGAAGAAACAGTGAAACTGCGAGTAGGGGTGCCCAAGAAAGAAGGCTTCCCGGAATTTGTGAACGTAATATTGGACGAAGATGAGCACAAGTACAATGTCACTGGATATTGCATGGATGTTTTCAATGCCGTATTAACAATCTTACCTTTCAAAGTTTCACTACAAATTGAAGCTTACGACGTTAATGAATCAACTGGAACATACGATGCACTAGTACAACAAATCCCCCAAAAGTATGATGTTATGGTAGGGGATATCACAATACTAGCGAAGCGTTCGAAGTTTGTTGATTTCACGTTGCCATATACAGAATCAGGAGTTCAAATGGTTGTAGCAGCAAGGCAGGGAAGGGAGCAAAGCATGTGGACTTTTGTGAAACCCTTCAGCTGGGATCTTTGGTTAAGCATAGTTGTCATGTCTATGTTCATAGGTTCTGTCATACTCATCATGGAAAGGAACAAGCAGGAGGTAGCCAATTCGCAACAACTAAGCCCAATCTACTTCTTATGGTTTCCAATTTCTCAAGCCGTTCTTCCTGAAAGAGAGGGAGTAGCGAAGAAGTGCTCGAGGTTTGTGTTGATGGTGTGGCTTCTATTGGCGTTTGTGCTGATGCAAAGCTACACGGCGAGCTTGACGACCATGATGACGGTGGAGCAGCTTCAACCGAGTTTTCTGAACGTGGATGATCTACGCACAGGGGATTACTATGTTGGATACCAAACTGGATCATTCGTTTATGATCTCTTGCTACACAAGTTGAAATTCAACGCTTCCAAGCTCAAGGCTATTGGCAGCATTTCTCAATATCACCAAGCTTTGAAGAATGGAAGCCGTGGCGGTGGCGTTTCCGCTATAGTCGATGAACTTCCCTACCTTAAACTCTTCCTTCAAAAATATGGATCTAATTACATGATCTCAGGTCCAACCTATCGAGCTGCTGGCTTTGGTTTTGCATTTGCAAGAAACTCTAATCTTACAACTGCATTTTCAAGAGGGATTCTGGAAGTGAGTGAGAGTGACAAAATGGATAATATCAAGGCAAAATATTTTGGCAAGATTATGAATAATGGATGGCAATACCAATCTGATTCTTCAACAACGTCGTCGTCCTCGTCGTCTTCTCCGAGCAGTCTCACGTTTCATAGCTTTTCAGGGCTGTTCCTCATAACTGGAATTGCTACTTTGTTGGCACTATTTGTCTCCGAGACAGTGATTTGGCGAACACCAATTTCCATGGCCAAAGCATATAGTCGCAGATATTTGTTCTGCACTAGCTCTACTTCTGCGCAAACTCATCCAACAACCGATGATGATTCTATTGGAAAATAA 1410 0.427 MANNKSLSYLVAWLVIMFLVAPSTASMEETVKLRVGVPKKEGFPEFVNVILDEDEHKYNVTGYCMDVFNAVLTILPFKVSLQIEAYDVNESTGTYDALVQQIPQKYDVMVGDITILAKRSKFVDFTLPYTESGVQMVVAARQGREQSMWTFVKPFSWDLWLSIVVMSMFIGSVILIMERNKQEVANSQQLSPIYFLWFPISQAVLPEREGVAKKCSRFVLMVWLLLAFVLMQSYTASLTTMMTVEQLQPSFLNVDDLRTGDYYVGYQTGSFVYDLLLHKLKFNASKLKAIGSISQYHQALKNGSRGGGVSAIVDELPYLKLFLQKYGSNYMISGPTYRAAGFGFAFARNSNLTTAFSRGILEVSESDKMDNIKAKYFGKIMNNGWQYQSDSSTTSSSSSSSPSSLTFHSFSGLFLITGIATLLALFVSETVIWRTPISMAKAYSRRYLFCTSSTSAQTHPTTDDDSIGK* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2996 469 Gene3D - 326 383 - -
Ahy11g2996 469 CDD GluR_Plant 32 377 - -
Ahy11g2996 469 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 5 465 - -
Ahy11g2996 469 Pfam Ligand-gated ion channel 380 420 IPR001320 GO:0015276|GO:0016020
Ahy11g2996 469 SUPERFAMILY Periplasmic binding protein-like II 7 379 - -
Ahy11g2996 469 Pfam Bacterial extracellular solute-binding proteins, family 3 58 379 IPR001638 -
Ahy11g2996 469 Gene3D - 149 286 - -
Ahy11g2996 469 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 5 465 - -
Ahy11g2996 469 SMART GluR_14 32 379 IPR001320 GO:0015276|GO:0016020
Ahy11g2996 469 Gene3D - 26 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2996 Ahy-Chr11 147572345 147574753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2996 32 427 Ion Channels AT5G11210 38.213 3.44e-87 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2996 K05387 - gmx:100807817 543.502