Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2985 ATGCCTCCTCAGCGTGATTCCCTACCCAAACCCAACCCTAATATCTTATCCTTCTTCCTCAAGCCAATCATCATGCTCCTCCTTACCACCCTATTCTTCCTCTTCCTTGGCTTCGCCGCTTTCATCCTCCTTCACCTCTTCCTCATCGGCGGCGCCCTCCACCGCCTCCGCTCCCGCCCCTACTCCTCCTCCTCCTCCCTCCACCCCTCCCCTTCCGACACCCTCTCCCCGCACCACCTCAGCAAGCTCCCCCACTTCCGCGTCTCTAGAGGATCCCCATACCCCGCTCCCGATTCCCGCTGCGTCGTCTGCCTCGACGGCTTCCGCAACGGCCAGTGGTGCAGGAACCTCGCCGGTTGCGGCCACGTCTTTCATCGGAGGTGCGTCGACACGTGGCTCGTCAAGGTTGCCGCTTGCCCCACATGCCGGACACCTGTTCGATTAAATGCCGCGGTAAAAAGAGACGATCACGGTCGCCAATTAGGGACCTGTGCTACAGCTGACTCCAACGCGCTTCCCACTTCATAG 528 0.6042 MPPQRDSLPKPNPNILSFFLKPIIMLLLTTLFFLFLGFAAFILLHLFLIGGALHRLRSRPYSSSSSLHPSPSDTLSPHHLSKLPHFRVSRGSPYPAPDSRCVVCLDGFRNGQWCRNLAGCGHVFHRRCVDTWLVKVAACPTCRTPVRLNAAVKRDDHGRQLGTCATADSNALPTS* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2985 175 Pfam Ring finger domain 100 143 IPR001841 -
Ahy11g2985 175 SUPERFAMILY RING/U-box 96 149 - -
Ahy11g2985 175 PANTHER RING-H2 FINGER PROTEIN ATL56 4 153 - -
Ahy11g2985 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 148 IPR013083 -
Ahy11g2985 175 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Ahy11g2985 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 4 153 - -
Ahy11g2985 175 SMART ring_2 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2985 Ahy-Chr11 147412546 147415625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2985 10 148 C3H Transcription Factor Family AT2G18670 49.640 1.81e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2985 - - gmx:102664895 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2985 11 147412546 147415625 Ahy1g1993 1 96876537 96879621 hybridization