Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2872 ATGCCTTCACACAAGACTTTTAGGATCAAGAAGAAGTTGGCCAAGAAGATGAGGCAGAACAGGCCTATTCCTTACTGGATCCGCATGAGGACGGATAATACAATCAGGTATAATGCGAAGCGCAGGCACTGGCGCCGCACCAAACTAGGGTTCTAA 156 0.4808 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF* 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2872 51 SUPERFAMILY Ribosomal protein L39e 3 50 IPR023626 -
Ahy11g2872 51 PANTHER RIBOSOMAL PROTEIN L39E 1 51 - -
Ahy11g2872 51 Pfam Ribosomal L39 protein 9 49 IPR000077 GO:0003735|GO:0005840|GO:0006412
Ahy11g2872 51 ProSitePatterns Ribosomal protein L39e signature. 30 46 IPR020083 GO:0003735|GO:0005840|GO:0006412
Ahy11g2872 51 PANTHER 60S RIBOSOMAL PROTEIN L39-2 1 51 - -
Ahy11g2872 51 Hamap 50S ribosomal protein L39e [rpl39e]. 1 51 IPR000077 GO:0003735|GO:0005840|GO:0006412
Ahy11g2872 51 Gene3D Ribosomal protein L39e 1 51 IPR023626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2872 Ahy-Chr11 146377235 146377944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2872 1 51 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.196 1.38e-29 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2872 K02924 - gmx:100801450 112.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2872 11 146377235 146377944 Ahy1g2089 1 97859715 97860418 hybridization