Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2858 ATGGCTTTCCACGAGCACCATATGCAGCACGAGATAGCGTTTCAGCGCTTCACCGAGGAGCAAGAACTAACAGCAGAGAATAGGGACATGCAGCAGCAGAGGGCGGCGGGGGTGGTTGCGCCGCCGACGTGGCTCAACAACCCTAGCAGTCATCATCATCGACAGCAGCAGAATTTCCTGCACCAGCTGCAACCACCACCACCACCACCGGAGACAGCGACCACGACGGAGAAGAGCATGGATCGGAACACAAGTTTCGAATCGTCTGATGAATTGAGGGAATACAAAGCAGACATCTTAGGACACCCGCTGTACGACCAGCTTCTGTCGGCTCATGTTTCTTGCCTGAGAATCGCCACACCAGTTGACCAGCTTCCACGGATCGACGCGCAGTTGCAGCAGTCGCAGCGCGTCGTTGATAAGTACTCTGCCCTCGCAAACCCTGTCGTTGATGACAAGGAGCTCGATCACTTCATGACACATTATGTTCTGCTGCTATGTGCGTTCAAGGAACAGTTGCAGCAACATGTCCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTCGAGCAGTCTCTACAAAGCTTGACCGGTGTATCTCCTGGGGAAGGAACGGGAGCAACAATGTCGGACGACGAAGATGAGCAAGCGGAGAGCAACGGTGGCGGCGGTGGCGGGGGGAACCTATACGAAGGAAGCTTTGACGGTGTTGATAGTCTTGGTTTTGGTCCTCTTGTGCCGACTGAGAGTGAAAGATCGTTGATGGAGCGAGTGAGGCATGAACTGAAGCATGAACTCAAACAGGGTTACAAGGAGAAGATCGTTGACATCCGAGAAGAGATTCTCCGCAAGAGAAGAGCTGGCAAGCTTCCTGGTGACACCACCTCCCTTCTCAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTACCCTACTGAGGAAGACAAGGCCAGGCTGGTGCAGGAAACTGGATTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCTTCCTCTAGTAACTCTAAAACCAAGCGCAAGAGTGCAGGTGAGAGCAGTAACCAAAGCTTCATGTGA 1113 0.5184 MAFHEHHMQHEIAFQRFTEEQELTAENRDMQQQRAAGVVAPPTWLNNPSSHHHRQQQNFLHQLQPPPPPPETATTTEKSMDRNTSFESSDELREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSALANPVVDDKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDEQAESNGGGGGGGNLYEGSFDGVDSLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKTKRKSAGESSNQSFM* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2858 370 MobiDBLite consensus disorder prediction 340 370 - -
Ahy11g2858 370 MobiDBLite consensus disorder prediction 43 61 - -
Ahy11g2858 370 ProSiteProfiles 'Homeobox' domain profile. 283 346 IPR001356 GO:0003677
Ahy11g2858 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 364 - -
Ahy11g2858 370 CDD homeodomain 286 347 IPR001356 GO:0003677
Ahy11g2858 370 MobiDBLite consensus disorder prediction 41 88 - -
Ahy11g2858 370 SMART KNOX1_2 93 137 IPR005540 GO:0003677|GO:0005634
Ahy11g2858 370 Pfam KNOX2 domain 149 199 IPR005541 GO:0003677|GO:0005634
Ahy11g2858 370 Gene3D - 289 366 - -
Ahy11g2858 370 Pfam ELK domain 263 284 IPR005539 GO:0003677
Ahy11g2858 370 ProSiteProfiles ELK domain profile. 263 283 IPR005539 GO:0003677
Ahy11g2858 370 MobiDBLite consensus disorder prediction 199 232 - -
Ahy11g2858 370 Pfam KNOX1 domain 95 136 IPR005540 GO:0003677|GO:0005634
Ahy11g2858 370 SUPERFAMILY Homeodomain-like 285 350 IPR009057 -
Ahy11g2858 370 SMART KNOX2_2 145 200 IPR005541 GO:0003677|GO:0005634
Ahy11g2858 370 Pfam Homeobox KN domain 303 342 IPR008422 GO:0003677|GO:0006355
Ahy11g2858 370 SMART HOX_1 285 350 IPR001356 GO:0003677
Ahy11g2858 370 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 29 364 - -
Ahy11g2858 370 SMART ELK_2 263 284 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2858 Ahy-Chr11 146207593 146212246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2858 95 367 Homeobox Transcription Factor Family AT5G11060 81.655 1.42e-162 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy11g2858 KNOX2 1.40E-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2858 - - gmx:100781997 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2858 11 146207593 146212246 Ahy11g2858 11 146207593 146212246 ECH
Ahy11g2858 11 146207593 146212246 Ahy1g2101 1 98071184 98075573 hybridization