Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2851 ATGGGTTCCGCCACCAGTAGACTAGAGGGTTCTCGCCCTCCCACGCCGAGGCTCAACCGCAACAACACACGCTTCAGCCTCTCCTCTCTTCTCTGCGGTGCTTCCACCTCTCGCTCCACCTATCAGATGGAAGAACATCCATCTGAACTTCAGGTAGATTTAGCAACAGAACCTGATGGTGGAACTCAGGATATCACTGAGGAATCATCTTTATCCTGTACAGAAGCTAGAATCAGCTGCAGCCACCATGCTGAAGCCGCTACCTCATCCAATACAAGAACTGAGTCTCATCAGTATATTGGTGTTGAAGGTTCTTCCATAAATGTTGCAGCAAGTAGTCAGAGGAAGTGCTTGTCTGAATGTAAGGAGCTAGTCCCTCCTCATCAGGTAAGTGCTGGTCATAGTGGTAATGAATCATATAGGGATAGTAGCAATACAGCTAGTACTTCTTTTGTAGATCAACAATCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGGAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTATCTCAAATCTCACATGAGACCGTGCATCCATGGAGTTCGAGCCCTCGGGAGAATGGATATTTTAGTTCTGGGGAAATTTCTGTTGAGAATGATGCATTAATGGCTACCCAAAGTCCTTCTTCGGATCCTGTTTCTCAAGTTTCCAATTTACCGGCACCTTCTCCTATGCCCGAAGATGAACCTCACAGAGAGGCAATACCTTCAGGTTTAGGTATTCTTGTGTCTAATCGGGAAAGAGTGCAGGGAAATGATAGTGTGCTTCAAGTTGATGTTGTCACAATATCCTCCAACATCTTGTCTGGCAGCACTGCTGATGCCAATGATCATGATACCGGAAGGAGTGGTAGAAGAATATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGCGACTCTCAAACAATTGTCTTCTCTGCTGGCGGTGCCGATGATCCTAGATCTCAAGATAGATGGCTTGTTGATCTTGGTGGGGATTTCTCCAACGATGGGTTTGGAGGTGCTTCTTCTGGATATGTAGGCAGTAGAATTCACAGATTTAATGAAAGAATGCGGCACTCAAGATCCGAGATCTGGGAAAGGCTTCGAGGTGGCCTTGATGATTTTGGTCGTTTGAATTCTTCATGTCCATCAGGACTTCATGCAGATGGTATGTGCTCATGTGAGTCTTTACCAACAGCTGAAGAATCTAGCACTCGAGCAAGTATTTCAAGAATTGTCATGCTGGCTGAAGCACTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTATCGCTTTCCCTATCCATGGTTTCTCTCCCCGCACCTGAATCAGTTGTCGACTCTTTTCCTCTTAAGTCTCACAAAAAGGTCGATGCAGCTGACGGTGGCAGTGATGCTGAACAATGTTACATATGTTTGGCGGAGTATGAAGAAGGGGACCAAATAAGAGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGCGTTGATAAGTGGCTTAAAGAAATACATGGCGTATGCCCTCTTTGTCGTGGCAATGTTTGTGGAGGGTTCACGGAGTCTTCTGCCAACTCAGTGCCATCTCATTGA 1623 0.4547 MGSATSRLEGSRPPTPRLNRNNTRFSLSSLLCGASTSRSTYQMEEHPSELQVDLATEPDGGTQDITEESSLSCTEARISCSHHAEAATSSNTRTESHQYIGVEGSSINVAASSQRKCLSECKELVPPHQVSAGHSGNESYRDSSNTASTSFVDQQSSDPVSVNVSANKDGVNNVDDPVVSGVSQISHETVHPWSSSPRENGYFSSGEISVENDALMATQSPSSDPVSQVSNLPAPSPMPEDEPHREAIPSGLGILVSNRERVQGNDSVLQVDVVTISSNILSGSTADANDHDTGRSGRRIFWDAFSRRSSRRLGDSQTIVFSAGGADDPRSQDRWLVDLGGDFSNDGFGGASSGYVGSRIHRFNERMRHSRSEIWERLRGGLDDFGRLNSSCPSGLHADGMCSCESLPTAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPLKSHKKVDAADGGSDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSANSVPSH* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2851 540 MobiDBLite consensus disorder prediction 132 170 - -
Ahy11g2851 540 MobiDBLite consensus disorder prediction 36 70 - -
Ahy11g2851 540 CDD mRING-H2-C3H2C2D_ZSWM2 479 522 - -
Ahy11g2851 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 535 - -
Ahy11g2851 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 535 - -
Ahy11g2851 540 MobiDBLite consensus disorder prediction 1 24 - -
Ahy11g2851 540 MobiDBLite consensus disorder prediction 127 205 - -
Ahy11g2851 540 SMART ring_2 480 521 IPR001841 -
Ahy11g2851 540 MobiDBLite consensus disorder prediction 217 244 - -
Ahy11g2851 540 SUPERFAMILY RING/U-box 467 525 - -
Ahy11g2851 540 MobiDBLite consensus disorder prediction 217 234 - -
Ahy11g2851 540 MobiDBLite consensus disorder prediction 177 205 - -
Ahy11g2851 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 526 IPR013083 -
Ahy11g2851 540 Pfam Ring finger domain 479 522 IPR001841 -
Ahy11g2851 540 ProSiteProfiles Zinc finger RING-type profile. 480 522 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2851 Ahy-Chr11 146115968 146119410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2851 394 526 C3H Transcription Factor Family AT5G45290 55.102 6.44e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2851 - - gmx:100783604 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2851 11 146115968 146119410 Ahy11g2851 11 146115968 146119410 ECH
Ahy11g2851 11 146115968 146119410 Ahy1g2109 1 98181915 98185315 hybridization