Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2766 ATGGCTCTTCCACACACACCACCGCAACCATATACATGGCTCTGGCCACCTGCCTCACCTCTATCCTCCTCCAGGATGACCACGATCACCACCTCCGGTACTCCCACCCTGACCACCATCACCTCTACCTTAGTGGCCCTCGTAACCACCTCCACCACCTCCCTGACCTCCCGTCACCACCGTTGTACCCTCCTCCACCACCACCACTTCCCTGACCCCGTCGTCACCTCCATCGTCTCCGTCATCACCACCTTCGTCCTCACCGCTACCCTCATCCTCTCCGCCTCTGCCTCCACGTCGGCCTCTACCTCACCACCACCTCTAGCTCCTCTACGGCCGCGACCCCTCCCCCCTCGCCGTCCAACCATGCCCAACCCTTCCCACCAAACCCCATTTCCGATTCCCGTCCTCAAAAAAGAATCAAAAGACCCTGTGGTTCAGTTTCTGGAAGGAGAACTTCTCATAGTGTGTTTGTATTCCAATCCAGGTGGACGCTTTGCCTCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTTATGGATGTTCCCGCTTTCTTCCTTGTCCGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGCGGTAAAAGCCAAAATCAAGTCTGCTAAATCAAAAGATGAGTCTGAATCTCTTAAATTTACTCAAAAGAAACTGATTAACAAGATATATACTAATTCTGCAGATGCCAAGATTCCTGCTGCTCTTGAATATCTCGGAACTTTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCAGGGATGTGGTGCAATTCAAACCGGATAA 1161 0.4823 MALPHTPPQPYTWLWPPASPLSSSRMTTITTSGTPTLTTITSTLVALVTTSTTSLTSRHHRCTLLHHHHFPDPVVTSIVSVITTFVLTATLILSASASTSASTSPPPLAPLRPRPLPPRRPTMPNPSHQTPFPIPVLKKESKDPVVQFLEGELLIVCLYSNPGGRFASREKMSLLKNCRSFLSNFFFIPVGMLQRNSNMTRLWMFPLSSLSEAEKVLGEISNYKVQLEAVKAKIKSAKSKDESESLKFTQKKLINKIYTNSADAKIPAALEYLGTFIEAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASRQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGQGCGAIQTG* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2766 386 Pfam Helicase conserved C-terminal domain 270 377 IPR001650 -
Ahy11g2766 386 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 386 IPR001650 -
Ahy11g2766 386 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 212 378 - -
Ahy11g2766 386 Coils Coil 213 240 - -
Ahy11g2766 386 Gene3D - 191 380 IPR027417 -
Ahy11g2766 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 379 IPR027417 -
Ahy11g2766 386 MobiDBLite consensus disorder prediction 106 131 - -
Ahy11g2766 386 MobiDBLite consensus disorder prediction 98 134 - -
Ahy11g2766 386 SMART helicmild6 294 377 IPR001650 -
Ahy11g2766 386 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 212 378 IPR030101 GO:0006281|GO:0031297|GO:0036310
Ahy11g2766 386 CDD SF2_C_SNF 263 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2766 Ahy-Chr11 144940436 144944957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2766 248 378 RAD5 or RAD16-like Gene Family AT1G05120 31.852 2.14e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2766 K14440 - ahf:112723252 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2766 11 144940436 144944957 Ahy11g2766 11 144940436 144944957 ECH