Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2754 ATGGGTCGTGGAAAGATTGAGATAAAGCTCATCCAGAACCCAACCAACAGGCAAGTTACATACTCAAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCACTCATCATGTTCTCCAAGAACAACAAGATGCATGAATACATCGGCCCTGGCCTTAGCACAAAGAAGTTCATTGATCAGTATCGGAAAACTTTGGGAGATATCGATCTCTGGCATTCTCACTATGAGAAAATGCTTGAGAATTTGAAGAAACTCAAAGATACTAATAATAAGCTCAGAAGACAGATCAGGAATCGGATAGGGGAGGGTAGCTTGGATATGGATGATATGAGCTCTCAGCAACTGCGTACTCTTGAAGAGGATATGGTTTCTGCCATTGCCAAAATACGCCACTGTCAACCCCCCAGCCGCCGCCACTCTTTTCATCCTCACCTTCTCTGTGCTCGTCGCGAAGCCCTATCAGCCGCCGCTACTCTTCTCCTCATCACCGTATATATGTGCTCGTCGTGA 540 0.4537 MGRGKIEIKLIQNPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIGPGLSTKKFIDQYRKTLGDIDLWHSHYEKMLENLKKLKDTNNKLRRQIRNRIGEGSLDMDDMSSQQLRTLEEDMVSAIAKIRHCQPPSRRHSFHPHLLCARREALSAAATLLLITVYMCSS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2754 179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy11g2754 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Ahy11g2754 179 Pfam K-box region 82 141 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy11g2754 179 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Ahy11g2754 179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy11g2754 179 PANTHER APETALA3 1 143 - -
Ahy11g2754 179 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Ahy11g2754 179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy11g2754 179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy11g2754 179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy11g2754 179 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 143 - -
Ahy11g2754 179 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy11g2754 179 Gene3D - 14 110 IPR036879 GO:0003677|GO:0046983
Ahy11g2754 179 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2754 Ahy-Chr11 144262626 144267014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2754 1 140 MADS-box Gene Family AT3G54340 55.714 1.06e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy11g2754 K-box 3.60E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2754 K09264 - gmx:100784496 248.825