Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2675 ATGACATACCACAACTCTCGTCGGAGCCCCGCGCACTTCCGCCCTGGAGGCCGCGGCTTCCACAGCTCGCCACGTCGCTCTCCCGCTGGGCCTGGAGGTTTCCACCCAATCGGCCCCGGCGAAGGGTTCGGGCCGATGGGTGGTGACGGTTACGGAGAATACGGGTTCAACACTTACCAGGCTCCTCCTCCGCAGCTGTCTGGTCACAAGCGAGGGTTTCGTGGAGTTTCGCCAGATCGTTTTGATGGTGGAAACTTTGCCAAACTATTTGTTGGATCTGTGCCCCGAACAGCCACTGAAGAAGATATTCGACCTTTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCGCTGATCAAGGATAAAAAAACTGGGCAGCATCAAGATTTTTGTTGTGCAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTACACAATCAGCATACCCTTCCTGGAGGTGTTGGTCCTATCCAAGTACGCTATGCTGACGGGGAGCGGGAACGGCTTGGTGCAGTTGAGTACAAATTATTTGTGGGATCTCTGAACAAACAAGCTACAGTGAAGGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTCATGCGTGATGAGAAAAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCGCATAGGGATATGGCATTGGCAGCTATAAATGCACTGAATGGGATTTATACAATGAGAGGTTGTGATCAACCTCTAATTGTGCGGTTTGCTGATCCCAAGAGACCTCGTCAAGGAGATTCTAGGGGTCCTGCACTTGGTGGCCCAGGATATGGTTCTAGATTTGATGCACCAGGCCCAAGATTTCCATCAAATATTACTGATCCCATGGGTGATCGTATGCCTCCTCCTAATGCTTGGCGTCCAATGCATGCACCAAATATGGGCCCATCCCCGAATGCTGGTTTTCATGCGGTGGGGCCTCCAATGCTTCCAAGGTCTGGTGACATGGCATTGCCTACAAATCCAGGTGGTCCTATGACTGGCATGGGAGGTCCAATAGATGACCGTTTCCAAGTGCAAAATTTTCCACCATTTTCACAACAGAATTTCAACCAGCCTATGCCACAAATTCCACCAGCCAACCAGCAACAACAAATAGCACCATTGCACAAACCGACACAATCTTCTCAGGAGTTGCCTCCTTCCCACCAGTCGTACCCGCAAGGTCCAACACCCTACTTACAAACTCCACCACCTTCATCTGTACGGCATCCTGGCCAGCCACAACTTCCACTCCCTGCTGGTTCTCTACCTTCACAGCAGATACATAGCATGAGTGGGCAGTTCCCAACTTCACAACCCCAAGCTCAGCCGAGTTCTTTGGCTACTGCATTTCCCCAGGCACCTCTTGATACCAGCGGAAAATCTGGTACAACTTTGGCTACTTCAAATAAACAGCAAGTTCCCACTGGGCAGCAGCAGACAGTTCAACCTCTTCAGCAATCCCCCTCTCAGTTAGCTCAGATGCTGTCACAGCAAACTCAGACTTTACAAGCAAGCTTTCATTCCTCCCAGCAGGCCTTCTCCCAGCTCCAACAACAACTACAGATGATACAACCATCTAGTCAGGCTAATACATTGCAGCAAAATTCAGAAGCTACTAAAAATCAGTCTCAATGGGCTGGGACCATACCGCAGACCATGGTCAGCACTGCTGCAGAAATTCCTTCATCTGCATCTGCTTCTGCTTCTGCTTCTGCTGCTGTCCCAGTGGTAAGCCCAAACACAGCTATTGTGAAATGTAATTGGACAGAGCATTTATCTCCAGAGGGTTTCAAGTATTACTACAATAGTGTCACTGGTGAAAGTAGGTGGGAGAAACCAGAGGAGTTGACATTATATGAACAGCAAAAGCAACAGCAAATGATGTCTATTCAGCAGTCTCAGTCTCAGTCACAGCCTTCAGTAATATCTGCTCAGCAACTTCCTCAAGTCCAACAGGTTCAGCCTCAAGGTAATCAAGGCCGGGTTCTCCACCATCAACAAATGCAGCAGCCCCCAGTGTTCCAGGCATACGGAGTTACAGGTCACCAAGGTATTCAGGATTATAAACAGATACAGGCATCTGGAATTTCTGCTGTTGATGCTGGACGCTACTCTCAGGAGTTTGAACTTGGATTTTTTGAGCTTTGA 2205 0.4844 MTYHNSRRSPAHFRPGGRGFHSSPRRSPAGPGGFHPIGPGEGFGPMGGDGYGEYGFNTYQAPPPQLSGHKRGFRGVSPDRFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQDFCCAGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEVFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPALGGPGYGSRFDAPGPRFPSNITDPMGDRMPPPNAWRPMHAPNMGPSPNAGFHAVGPPMLPRSGDMALPTNPGGPMTGMGGPIDDRFQVQNFPPFSQQNFNQPMPQIPPANQQQQIAPLHKPTQSSQELPPSHQSYPQGPTPYLQTPPPSSVRHPGQPQLPLPAGSLPSQQIHSMSGQFPTSQPQAQPSSLATAFPQAPLDTSGKSGTTLATSNKQQVPTGQQQTVQPLQQSPSQLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQANTLQQNSEATKNQSQWAGTIPQTMVSTAAEIPSSASASASASAAVPVVSPNTAIVKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLYEQQKQQQMMSIQQSQSQSQPSVISAQQLPQVQQVQPQGNQGRVLHHQQMQQPPVFQAYGVTGHQGIQDYKQIQASGISAVDAGRYSQEFELGFFEL* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2675 734 MobiDBLite consensus disorder prediction 262 298 - -
Ahy11g2675 734 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 251 IPR000504 GO:0003723
Ahy11g2675 734 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Ahy11g2675 734 MobiDBLite consensus disorder prediction 364 408 - -
Ahy11g2675 734 Pfam WW domain 605 632 IPR001202 GO:0005515
Ahy11g2675 734 MobiDBLite consensus disorder prediction 546 565 - -
Ahy11g2675 734 MobiDBLite consensus disorder prediction 409 430 - -
Ahy11g2675 734 ProSitePatterns WW/rsp5/WWP domain signature. 607 632 IPR001202 GO:0005515
Ahy11g2675 734 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 58 692 - -
Ahy11g2675 734 MobiDBLite consensus disorder prediction 1 46 - -
Ahy11g2675 734 CDD RRM2_FCA 184 263 IPR034645 -
Ahy11g2675 734 SUPERFAMILY RNA-binding domain, RBD 62 177 IPR035979 GO:0003676
Ahy11g2675 734 MobiDBLite consensus disorder prediction 640 684 - -
Ahy11g2675 734 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 263 IPR000504 GO:0003723
Ahy11g2675 734 SUPERFAMILY WW domain 606 639 IPR036020 GO:0005515
Ahy11g2675 734 ProSiteProfiles WW/rsp5/WWP domain profile. 601 634 IPR001202 GO:0005515
Ahy11g2675 734 PANTHER TRANSFORMER-2-RELATED 58 692 - -
Ahy11g2675 734 SMART ww_5 602 634 IPR001202 GO:0005515
Ahy11g2675 734 Gene3D - 83 178 IPR012677 -
Ahy11g2675 734 MobiDBLite consensus disorder prediction 349 512 - -
Ahy11g2675 734 Gene3D - 179 271 IPR012677 -
Ahy11g2675 734 SUPERFAMILY RNA-binding domain, RBD 183 284 IPR035979 GO:0003676
Ahy11g2675 734 MobiDBLite consensus disorder prediction 437 512 - -
Ahy11g2675 734 SMART rrm1_1 184 259 IPR000504 GO:0003723
Ahy11g2675 734 SMART rrm1_1 88 169 IPR000504 GO:0003723
Ahy11g2675 734 CDD WW 604 634 IPR001202 GO:0005515
Ahy11g2675 734 Gene3D - 603 648 - -
Ahy11g2675 734 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2675 Ahy-Chr11 143088966 143098832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2675 86 269 Eukaryotic Initiation Factors Gene Family AT1G71770 25.500 8.01e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2675 - - gmx:100798390 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2675 11 143088966 143098832 Ahy11g2675 11 143088966 143098832 ECH
Ahy11g2675 11 143088966 143098832 Ahy1g2261 1 100488088 100497436 hybridization