Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy11g2618 | ATGGTGGATTCAACTGGAAAAGGATCGGACTCCGATGATGCAAGCCCTAACTCCGCCGCCGCAGGTAAAAGTCCAACAACCGAGCAGAAGAAGACGTGCGCCGACTGCGGTACCTCCAAGACTCCTCTCTGGAGAGGTGGCCCCGCCGGCCCCAAGTCTCTATGCAATGCCTGCGGGATCAGGAGCCGCAAGAAGAAAAGAGCCATTCTCGGAATCACAAGAGGAACCACCACCGACGATGTTAAAAAGGGGAAAAGAAGCAACACCGTCGCCAATAGTAATAATAACAAGTTTGGGGATAGCTTTAGTTTCAAGAAGAGGTGGATCACAATGGCGAGGCAGAGATCGAATCCCGCGCACAGCCACAGGGACAAGTTGGGAGAGGAAGAACAAGCTGCTTTCCTGCTCATGTCTCTCTCTTATGGATCCGTTTATGCCTAA | 441 | 0.5215 | MVDSTGKGSDSDDASPNSAAAGKSPTTEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGITRGTTTDDVKKGKRSNTVANSNNNKFGDSFSFKKRWITMARQRSNPAHSHRDKLGEEEQAAFLLMSLSYGSVYA* | 147 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy11g2618 | 146 | SMART | GATA_3 | 27 | 87 | IPR000679 | GO:0006355|GO:0043565 | |
Ahy11g2618 | 146 | ProSitePatterns | GATA-type zinc finger domain. | 33 | 58 | IPR000679 | GO:0006355|GO:0043565 | |
Ahy11g2618 | 146 | PANTHER | OS01G0976800 PROTEIN | 1 | 146 | - | - | |
Ahy11g2618 | 146 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Ahy11g2618 | 146 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Ahy11g2618 | 146 | Pfam | GATA zinc finger | 33 | 67 | IPR000679 | GO:0006355|GO:0043565 | |
Ahy11g2618 | 146 | ProSiteProfiles | GATA-type zinc finger domain profile. | 27 | 63 | IPR000679 | GO:0006355|GO:0043565 | |
Ahy11g2618 | 146 | Gene3D | - | 27 | 98 | IPR013088 | GO:0006355|GO:0008270 | |
Ahy11g2618 | 146 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 26 | 67 | - | - | |
Ahy11g2618 | 146 | CDD | ZnF_GATA | 32 | 89 | IPR000679 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy11g2618 | Ahy-Chr11 | 142390936 | 142392169 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy11g2618 | 24 | 146 | C2C2-Gata Transcription Factor Family | AT5G49300 | 55.285 | 4.25e-40 | 130 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Ahy11g2618 | GATA | 1.40E-16 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy11g2618 | - | - | aprc:113847917 | 181.8 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy11g2618 | 11 | 142390936 | 142392169 | Ahy1g2312 | 1 | 101127120 | 101128210 | hybridization |