Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2585 ATGACACTCAACACCAACAAGATTCAACGAAGAAACATTCCAACTCCCGAATTACTCTCTCTCTCCATCTCTTTTTATTTCTTTGCCAAGGCACAGTTACACAGAAAGATGGACAATGGCGGCAATGCCAATAAGAGCAGCTACGACGACATAAACGGCAAGATAATGCTGATATCAATCATCATTGTCTCCCTCGTTCTCACCATAATGATATGCTTCCACATCTACGCCCGCTTGTATCTCCGACACTCTCGCCAACTCCGCCGCAATAATCATAGCATCCGCCGGAACGCGCACCACCACCCTCACTTCGTATTCTACGTGAACCCCGCCGTCATGTTGGCCTCCCGCGGCCTCGATGCCTCCGTGATTGCCTCCCTTCCCGTCTTCACCTTCTCCCGCAAGACCCACCCTCACACCGTCGACTGTCCCGTTTGCCTCTCGGAGTTCGAGGAAGGGGAAACGGGTCGGGTCTTGCCCACGTGCAACCACACCTTCCACACTGAATGCATCGATATGTGGTTCCACTCCCACTCCACCTGCCCACTTTGCAGGGCACCCGTGGAGACTCCGAAACGACCCGATTTGGTTATAACTGTGGGCCATTCTGAACCAGGTTCGAGTTTTCAAGGTGATGGACTGAACCAAACCGGACCCGTGGTTTCTCCTAGTTTGGTCCCAAAGGATTCTTCGTCGATTGTGAATGTGAGCGTTGAGGTGCCCGCAAGAAACGAAGATTATGGTTGTCAGTCGCCGTCGTCTTCATCGTCGTTTCGGTCACCGGTGGGTCGCATGAAGAGGATTCTGAGCAGAGAGCAAAAAGCGAGCACAGTTGGGTGCAGCTCCACGGCAGAGGAAGGTGTACGATCGGAGACTCAGTAA 882 0.5272 MTLNTNKIQRRNIPTPELLSLSISFYFFAKAQLHRKMDNGGNANKSSYDDINGKIMLISIIIVSLVLTIMICFHIYARLYLRHSRQLRRNNHSIRRNAHHHPHFVFYVNPAVMLASRGLDASVIASLPVFTFSRKTHPHTVDCPVCLSEFEEGETGRVLPTCNHTFHTECIDMWFHSHSTCPLCRAPVETPKRPDLVITVGHSEPGSSFQGDGLNQTGPVVSPSLVPKDSSSIVNVSVEVPARNEDYGCQSPSSSSSFRSPVGRMKRILSREQKASTVGCSSTAEEGVRSETQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2585 293 MobiDBLite consensus disorder prediction 274 293 - -
Ahy11g2585 293 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Ahy11g2585 293 SUPERFAMILY RING/U-box 123 191 - -
Ahy11g2585 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 191 IPR013083 -
Ahy11g2585 293 PANTHER RING-H2 FINGER PROTEIN ATL64 44 196 - -
Ahy11g2585 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 44 196 - -
Ahy11g2585 293 CDD RING-H2_EL5_like 142 185 - -
Ahy11g2585 293 SMART ring_2 143 184 IPR001841 -
Ahy11g2585 293 MobiDBLite consensus disorder prediction 244 293 - -
Ahy11g2585 293 Pfam Ring finger domain 142 185 IPR001841 -
Ahy11g2585 293 MobiDBLite consensus disorder prediction 247 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2585 Ahy-Chr11 142023409 142024583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2585 35 277 Rapid Response to Elicitors AT3G16720 41.636 2.12e-50 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2585 - - aip:107638764 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2585 11 142023409 142024583 Ahy11g2585 11 142023409 142024583 ECH
Ahy11g2585 11 142023409 142024583 Ahy1g2342 1 101415703 101416806 hybridization
Ahy11g2585 11 142023409 142024583 Ahy14g1029 14 17835009 17836338 PCT
Ahy11g2585 11 142023409 142024583 Ahy4g0933 4 17378060 17379329 PCT
Ahy14g1029 14 17835009 17836338 Ahy11g2585 11 142023409 142024583 PCT
Ahy4g0933 4 17378060 17379329 Ahy11g2585 11 142023409 142024583 PCT