Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2542 ATGTTTCACTCAAAGCATCACTCTCTTACAAGAGCTCTTCTCTTCTTCCTCAGCCACAACCCCCCTCTTCCATCTCCATCCACAAAATCTTACCTTCTTCTTCTTCGGCCAGAAGCACGCCGCCACTCAACCACCTCCACTTCCGATGACCACCACTCTTTCACTATCTCCTACCTCACCACCAAGTGCGGCTTCTCCCATGAAGACGCTCTCAGAGCAAACAAGCGCGTTCGCTTTGACACCCCCGTCAAGCCAGATTCCGTCATCTCCTTCTTCAAAGCCCACGGTTTCTCCCCCTCCCAAATAGCCACCATCATGTGCAAGATTCCCGTGGTACTCACATATGACCCCACCAAAGCGATCTTGCCAAAGTTTCAATTTTTGGCATCCAAAGGTGCTTCTCCCTCTGACATTGTACTCATGACCACAAAGAGTCCCAACTTCCTGCTTCGAAGCCTTAACTATATAGTATCCTTGTACGAATTGGTAAGGAGGTTCTGTCCCTCTGATCTTAAAGCCATTGCTTATCTAACTGGATGCCCATCATCCATTGCTGATGTTCGTGTGCCTCAAAATGTGAAAATGCTGCTTGATGAAGGGTTGACCAATGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCCTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACAGTCTTATTTCAGTGTGGTGTTGCTGACCAAAAGGGCCGTAACTAAGTCCCGATGGGATGCTAAAGTTCATGTCCTTAAGAAATGGGGCTGGTCCGAACAAGATTTTTCAGAGGCCTATAGGAGGCACCCTCAGTTTATGCTACGTTCCGAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCGGCGCTTCGCATTAGACCGGTTCTTTTTGGTTACAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTCAAATATCTTCTCTCCAATGGTTTGATGAAGAAGAATGCTAGCATAATCACACCATTTTCTTTGACTGAGAAGCTGTTCCTAAAGAAGTGTGTCACATGTTTTGAGGAGAAAGATAGGTCTCGCCTATTAACACTATATCAGGGAGGATGTTAG 1146 0.4616 MFHSKHHSLTRALLFFLSHNPPLPSPSTKSYLLLLRPEARRHSTTSTSDDHHSFTISYLTTKCGFSHEDALRANKRVRFDTPVKPDSVISFFKAHGFSPSQIATIMCKIPVVLTYDPTKAILPKFQFLASKGASPSDIVLMTTKSPNFLLRSLNYIVSLYELVRRFCPSDLKAIAYLTGCPSSIADVRVPQNVKMLLDEGLTNANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSQSYFSVVLLTKRAVTKSRWDAKVHVLKKWGWSEQDFSEAYRRHPQFMLRSEDKLNAVMSFWISNLGWDSSALRIRPVLFGYSLEKRLIPRAKVVKYLLSNGLMKKNASIITPFSLTEKLFLKKCVTCFEEKDRSRLLTLYQGGC* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2542 381 Pfam mTERF 89 235 IPR003690 GO:0003690|GO:0006355
Ahy11g2542 381 Pfam mTERF 257 357 IPR003690 GO:0003690|GO:0006355
Ahy11g2542 381 PANTHER CGI-12 PROTEIN-RELATED 29 379 IPR003690 GO:0003690|GO:0006355
Ahy11g2542 381 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 29 379 - -
Ahy11g2542 381 Gene3D Transcription termination factor 3, mitochondrial 184 368 IPR038538 -
Ahy11g2542 381 Gene3D Transcription termination factor 3, mitochondrial 66 183 IPR038538 -
Ahy11g2542 381 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Ahy11g2542 381 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Ahy11g2542 381 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Ahy11g2542 381 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2542 Ahy-Chr11 141295574 141296719 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ahy11g2542 mTERF 2.50E-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2542 K15032 - gmx:102666739 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2542 11 141295574 141296719 Ahy11g2542 11 141295574 141296719 ECH
Ahy11g2542 11 141295574 141296719 Ahy1g2382 1 101897266 101901529 hybridization
Ahy11g2542 11 141295574 141296719 Ahy14g1080 14 19272079 19273098 PCT
Ahy11g2542 11 141295574 141296719 Ahy4g0983 4 19394071 19398776 PCT
Ahy14g1080 14 19272079 19273098 Ahy11g2542 11 141295574 141296719 PCT
Ahy4g0983 4 19394071 19398776 Ahy11g2542 11 141295574 141296719 PCT